Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10013750m |
Family | PL1 |
Protein Properties | Length: 439 Molecular Weight: 48658.3 Isoelectric Point: 7.5205 |
Chromosome | Chromosome/Scaffold: 6 Start: 12637254 End: 12639056 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 151 | 356 | 0 |
IQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLD HLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQ GNRFFA |
Full Sequence |
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Protein Sequence Length: 439 Download |
MQMELTKLRL FFLFSFAALI PCLSANISEV DEVWRRRAEE AMQTTEQYYD PNPVAIASHL 60 NMKVQDLSKQ TAARRGLLNA ESGQCEATNP IDNCWRCKEN WAENRQALAG CALGFGIKAT 120 GGKGGKIYEV TDPSDNDMEN PKVGTLRHAV IQKEPLWIIF AKDMNIKLQQ ELIVQGKKTI 180 DGRGANVHIA NGAGFMLQFV QNVIIHGIHI HNISPRSGGM IRDSVDHVGK RGQSDGDAVS 240 IFGSSNIWLD HLTLSQAHDG LIDAIQASTA ITISNCHFSN HDKAILLGAS DTFTEDKKMQ 300 VTVAFNRFDK GLVQRMPCVR FGFAHVVNND YNQWEMYAIG GLKGPTILSQ GNRFFASDNQ 360 NTKEVTKRMN CSPEEGKSWI WRSEGDVFLN GAYFNSSGDP KKQIEYQMDD VIKPKPGTEV 420 ERITKFAGAL VCKPGQKC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-10 | 26 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-32 | 178 | 429 | 279 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-64 | 169 | 354 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-69 | 163 | 358 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 18 | 438 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 18 | 438 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197015.4 | 0 | 3 | 438 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | XP_002330086.1 | 0 | 10 | 438 | 9 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 8 | 438 | 8 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 431 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 431 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-21 | 169 | 354 | 61 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-19 | 172 | 331 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 1e-17 | 103 | 358 | 3 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |