Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10013846m |
Family | CBM43 |
Protein Properties | Length: 229 Molecular Weight: 23968.3 Isoelectric Point: 9.2142 |
Chromosome | Chromosome/Scaffold: 6 Start: 18512664 End: 18513350 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 147 | 225 | 5.1e-35 |
WCVAKPTVPDSIIQEAMDYACGTGADCKPIQTNGSCFQPNTLVAHASYAFNSYWQKTKNRGGTCDFGGIAMLVTTDPSK |
Full Sequence |
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Protein Sequence Length: 229 Download |
MKKPKLSSRV NIHKNFYLSR AESNGLSAPF SFPPLESIAP LSSPHNNIPA PFCIYPPSTP 60 NLPFQSPPGV SPGLSPPSTG VPAVSPGLSP PQYVPSPPST GTRTPPPYGP SPPKLAPGSP 120 VYQPPMAHPP PAGPPPPPHQ NPRFPVWCVA KPTVPDSIIQ EAMDYACGTG ADCKPIQTNG 180 SCFQPNTLVA HASYAFNSYW QKTKNRGGTC DFGGIAMLVT TDPSKSGQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-27 | 147 | 217 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-39 | 147 | 227 | 81 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78496.1 | 0 | 26 | 224 | 71 | 253 | hypothetical protein [Vitis vinifera] |
EMBL | CBI34142.1 | 0 | 26 | 224 | 62 | 244 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264622.1 | 1.4013e-45 | 26 | 225 | 71 | 254 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307863.1 | 2.00386e-43 | 147 | 225 | 1 | 79 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520569.1 | 0 | 76 | 224 | 94 | 240 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-18 | 147 | 224 | 13 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG665507 | 79 | 146 | 224 | 9.99967e-42 |
EG679312 | 79 | 146 | 224 | 4.99997e-41 |
CK096422 | 79 | 146 | 224 | 5.99994e-41 |
EG679311 | 79 | 146 | 224 | 2e-40 |
CV259076 | 79 | 146 | 224 | 3e-40 |
Sequence Alignments (This image is cropped. Click for full image.) |
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