y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10014142m |
Family | GT5 |
Protein Properties | Length: 998 Molecular Weight: 113596 Isoelectric Point: 6.6057 |
Chromosome | Chromosome/Scaffold: 2 Start: 34905089 End: 34911624 |
Description | starch synthase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 584 | 996 | 0 |
HVIHIAAEMAPVAKVGGLGDVVAGLGKALQKKGHLVEIVLPKYDCMQYDRIDDLRALDVVVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQ FYGEHDDFRRFSFFSRAALELLLQAGKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDNSAH DRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKP LVGCITRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPVPHIQREFEGIANHFQNHDHIRLILKYDESISHSIYAASDIFIIPSIFEPCGLTQMIAMRYG TIPVARKTGGLND |
Full Sequence |
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Protein Sequence Length: 998 Download |
MVTCFNQIKR SQEKHKNGSH KLIRSSFDKP FDNRCWLGPT FHRPFDQDNF KRRSKAQLLV 60 LDRRSPSQIH FMASKISTSF ISPFVIHFNC KNSNNKNKHL NVPLLFSSRR LLPASCKMRQ 120 RSFGSQQKRQ HVKKGSPDQQ RPNDADLVPT SDGDTESESS LIDSEPIDVE HTEEQNLGSV 180 FVPELKESLV LNCDGGEELS TSQLDNLISM IRNAEKNILL LNEARVQALE DLHKILQEKE 240 ALQGEINALE MRLAETDARI RVAAQEKIHV ELLEDQLQKL QDELTHRGVS EHSELDVFAN 300 QSEPANEDLV LNNSEIHSFS KELDSLKTEN LSLKNDIKAL KAELNSVKDA DERVVMLEME 360 RSSLESSLKE LESKLSISQE DVAKLSTLKV ECKDLYEKVE NLQGLLAKAT KQADQAISVL 420 QQNQELRKKV DKLEESLDEA NIYKLSSEKM QQYNELMQQK MKLLEERLQR SDEEIHSYVQ 480 LYQESVKEFQ DTLHSLKEES KKRAVDEPVD DMPWEFWSRL LLIIDGWLLE KKLSTSEAKL 540 LREMVWKRNG RIRDAYMECK EKNEHEAIST FLKLASSSIS SGLHVIHIAA EMAPVAKVGG 600 LGDVVAGLGK ALQKKGHLVE IVLPKYDCMQ YDRIDDLRAL DVVVESYFDG RLFKNKVWVS 660 TIEGLPVYFI EPHHPDKFFW RGQFYGEHDD FRRFSFFSRA ALELLLQAGK QPDIIHCHDW 720 QTAFVAPLYW DLYVPKGLNS ARVCFTCHNF EYQGTAPAKE LASCGLDVQQ LNRPDRMQDN 780 SAHDRINPLK GAIVFSNIVT TVSPSYAQEV RTSEGGQGLH STLNFHSKKF VGILNGIDTD 840 AWNPATDTFL KVQYNANDLQ GKAENKESIR KHLGLSSADA RKPLVGCITR LVPQKGVHLI 900 RHAIYRTLEL GGQFILLGSS PVPHIQREFE GIANHFQNHD HIRLILKYDE SISHSIYAAS 960 DIFIIPSIFE PCGLTQMIAM RYGTIPVARK TGGLNDR* 1020 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 5.0e-117 | 583 | 996 | 417 | + synthase/transferase | ||
PRK00654 | glgA | 4.0e-151 | 583 | 996 | 416 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-158 | 584 | 996 | 415 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 4.0e-160 | 583 | 996 | 419 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PLN02939 | PLN02939 | 0 | 101 | 996 | 904 | + transferase, transferring glycosyl groups |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACT09058.1 | 0 | 108 | 995 | 33 | 916 | starch synthase IV precursor [Solanum lycopersicum] |
RefSeq | NP_193558.3 | 1e-17 | 72 | 238 | 1 | 219 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_193558.3 | 0 | 344 | 996 | 303 | 955 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002274716.1 | 0 | 72 | 996 | 1 | 927 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298514.1 | 0 | 173 | 996 | 1 | 803 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rzv_B | 0 | 583 | 996 | 1 | 402 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 0 | 583 | 996 | 1 | 402 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 0 | 583 | 996 | 1 | 402 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 1rzu_A | 0 | 583 | 996 | 1 | 402 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
PDB | 3d1j_A | 0 | 583 | 996 | 1 | 403 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CF828776 | 286 | 708 | 993 | 0 |
GO851132 | 333 | 658 | 990 | 0 |
GW865616 | 298 | 689 | 986 | 0 |
DV124304 | 258 | 647 | 904 | 0 |
EL448877 | 316 | 511 | 826 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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