Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10015423m |
Family | GH28 |
Protein Properties | Length: 411 Molecular Weight: 43421.3 Isoelectric Point: 7.9694 |
Chromosome | Chromosome/Scaffold: 2 Start: 23744323 End: 23745958 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 379 | 0 |
KEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNL SFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLG KYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACS GGVPCEGVELADISLTYTGPEGPIKSECTNIQPK |
Full Sequence |
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Protein Sequence Length: 411 Download |
MAKSNILALF LSLLMLSAAA ALDVDVTKHG AKQNADISQA LRDAWKEACA ATTPSKVLIP 60 QGTYQLSPVT MEGPCKAAIE LQVKGTLKAL TDPANVKDAG SWVSFNKIEH LTVSGGGTFD 120 GQGAVAPSEC EKDDYCKKRP IVSNLSFNAI TNSVVQDVTS LNSKQFHINV IGAKNFTFQR 180 VTVTAPEESL NTDGIHVGRS SGVTITDSKI GTGDDCISIG DGTQQMEINK IDCGPGHGIS 240 VGSLGKYQNE QPVVGIRVRE CNISNTSNGV RIKTWPASYP GTASDLHFED IKMNNVSNPI 300 LLDQVYCPHN QCNAKVPSRV KLDRVSFKNI RGTSATAVAI KLACSGGVPC EGVELADISL 360 TYTGPEGPIK SECTNIQPKT SGKMNPPPCI ASATPSGSAI PGRRRLSFNF * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-79 | 24 | 386 | 371 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-84 | 25 | 390 | 368 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-94 | 26 | 399 | 390 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-117 | 49 | 376 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-137 | 24 | 389 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 25 | 389 | 32 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 25 | 389 | 32 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 24 | 389 | 31 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 25 | 389 | 32 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 389 | 5 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 113 | 330 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000000006 | 148 | 376 | 110 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000000006 | 148 | 376 | 110 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000000006 | 148 | 376 | 110 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000006 | 191 | 382 | 153 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |