| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10015996m |
| Family | CE11 |
| Protein Properties | Length: 316 Molecular Weight: 34481.3 Isoelectric Point: 6.2329 |
| Chromosome | Chromosome/Scaffold: 2 Start: 27089513 End: 27093047 |
| Description | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE11 | 25 | 311 | 0 |
| QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEA EVPIFDGSASVWAEAIEQVGLKEALDCHGNNAEKVAPFLNQSIYVQREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFC IYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL | |||
| Full Sequence |
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| Protein Sequence Length: 316 Download |
| MTLSATFNAI KSSNVISWKS TGRLQQTLAG FIEKTGKTLH SGNVSTVRLC PEFAGKGRYF 60 EFRSRLIPAS IDFAKESPLC TTLFKDGVQI RTVEHLLSAL EAKGVDNCKI EIHNMVADDQ 120 DVEAEVPIFD GSASVWAEAI EQVGLKEALD CHGNNAEKVA PFLNQSIYVQ REDSFVAAFP 180 SQKVQISYGI DFPQVPAIGC QWFSTTPLEG TCYAMHIASS RTFCIYEEVE RMCNAGLIKG 240 GSLDNAIVCS ASEGWLNPPL RFPDEPCRHK LLDFVGDLSL FARNGSQGLP VAHMVAFKGG 300 HALHVDFARR LSGVM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK13188 | PRK13188 | 3.0e-62 | 25 | 312 | 320 | + bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed | ||
| TIGR00325 | lpxC | 2.0e-76 | 25 | 311 | 293 | + UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
| COG0774 | LpxC | 3.0e-85 | 23 | 311 | 297 | + UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane] | ||
| pfam03331 | LpxC | 1.0e-87 | 25 | 311 | 293 | + UDP-3-O-acyl N-acetylglycosamine deacetylase. The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. | ||
| PRK13186 | lpxC | 2.0e-99 | 25 | 311 | 292 | + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
| GO:0009245 | lipid A biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD94001.1 | 0 | 7 | 312 | 21 | 324 | hypothetical protein [Arabidopsis thaliana] |
| EMBL | CBI26831.1 | 0 | 1 | 314 | 1 | 312 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_173874.2 | 0 | 7 | 312 | 21 | 324 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Arabidopsis thaliana] |
| RefSeq | NP_173884.5 | 0 | 7 | 312 | 64 | 367 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Arabidopsis thaliana] |
| RefSeq | XP_002281269.1 | 0 | 1 | 315 | 1 | 311 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4fw7_D | 4e-34 | 25 | 311 | 7 | 277 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| PDB | 4fw7_C | 4e-34 | 25 | 311 | 7 | 277 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| PDB | 4fw7_B | 4e-34 | 25 | 311 | 7 | 277 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| PDB | 4fw7_A | 4e-34 | 25 | 311 | 7 | 277 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| PDB | 4fw6_D | 4e-34 | 25 | 311 | 7 | 277 | A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL383503 | 282 | 9 | 290 | 0 |
| GT006630 | 267 | 21 | 287 | 0 |
| GE608060 | 283 | 1 | 282 | 0 |
| DW082635 | 270 | 21 | 288 | 0 |
| CK277774 | 282 | 7 | 287 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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