Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10017592m |
Family | PL4 |
Protein Properties | Length: 621 Molecular Weight: 70097.4 Isoelectric Point: 6.8327 |
Chromosome | Chromosome/Scaffold: 2 Start: 35435316 End: 35438566 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 1 | 597 | 0 |
VILDNGLVRLTISKPQGYLIGIQYGGMDNLLDLKSSESSRGYWDINWNLPQGQDRYQLLNGSEYSVINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYI LRSGVSGFHCYSIYGRPPGCRAFDLAQTRLAFKLRRDKFHYMAITDEKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGG LHGWIGSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGETWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEA AWPYDFVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDK ALVNISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDIHPESDQVFTVGVNDPKKDWFFAHVDRM GPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQS |
Full Sequence |
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Protein Sequence Length: 621 Download |
VILDNGLVRL TISKPQGYLI GIQYGGMDNL LDLKSSESSR GYWDINWNLP QGQDRYQLLN 60 GSEYSVINMS NDSVEVSFRS SYDPSIQSTK LPLSVDIRYI LRSGVSGFHC YSIYGRPPGC 120 RAFDLAQTRL AFKLRRDKFH YMAITDEKQR IMPLPEDLLP GRGKQLIVPE SVLLVNPINP 180 DLKGEVDDKY QYSMDNKDGG LHGWIGSGPI IGFWIIFPSH EFRNGGPTKQ NLTVHTGPTC 240 LAMFHGTHYI GNEILAHFQE GETWRKVFGP IFVYLNSTSD ASKAYNLWID AKKQRLLQEA 300 AWPYDFVSSP YYLTANERGS ATGRFFVQDK FVSSSLIPAK YAYIGLSSAR TEGGWQTESK 360 DYQFWVQTDS KGNFTVKNVV PGVYGLHGWV PGFIGDYLDK ALVNISAGSQ TELGNLTYVP 420 LRNGPTVWEI GFPDRTALGC YVPDVNPMYV NKLFLNSPEK YRQYGLWDRY TDIHPESDQV 480 FTVGVNDPKK DWFFAHVDRM GPDNKYLPTT WTIKFHLDSI IKGTYNLRLA IASATRSDLE 540 IFVNYIDQGH LVYQEMNLGM DNTVCRHGIH GLYQLFSIHV SSLLLIKGDN SMFLVQSRSG 600 DPVCGVLYDY LRLEAPTSSS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-26 | 317 | 416 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-36 | 428 | 614 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-63 | 1 | 284 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-66 | 1 | 186 | 186 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23231.1 | 0 | 2 | 619 | 1 | 618 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001763359.1 | 0 | 1 | 619 | 1 | 623 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769727.1 | 0 | 1 | 616 | 4 | 620 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002285626.1 | 0 | 3 | 618 | 1 | 617 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002317123.1 | 0 | 1 | 620 | 15 | 633 | predicted protein [Populus trichocarpa] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GE473226 | 288 | 172 | 459 | 0 |
DY969340 | 318 | 219 | 534 | 0 |
DV995349 | 288 | 172 | 459 | 0 |
CO473731 | 278 | 172 | 449 | 0 |
GW864372 | 308 | 130 | 437 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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