Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10017808m |
Family | GH35 |
Protein Properties | Length: 849 Molecular Weight: 94116 Isoelectric Point: 6.3445 |
Chromosome | Chromosome/Scaffold: 2 Start: 32951406 End: 32957830 |
Description | beta-galactosidase 8 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 28 | 331 | 0 |
LVIDGKRRVLQSGSIHYPRSTPEVWPELIRKSKEGGLEVIETYVFWNYHEPIRGQYYFEGRFDLVRFVKTVQEAGLFLHLRIGPYACAEWNYGGFPVWLH FIPGIQFRTTNNPFKEEMKRFLAKIVDLMKQENLFASQGGPIILAQVENEYGNVEWAYGVGGELYVKWAADTAVNLNTSVPWVMCQQEDAPDPIINTCNG FYCDGFTPNSPSKPIMWTENYSGWFLSFGYAVPFRPVEDLAFAVARFFETGGTFQNYYMYFGGTNFGRTAGGPLVATSYDYDAPIDEYGFIRQPKWGHLR ELHK |
Full Sequence |
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Protein Sequence Length: 849 Download |
MMMVIQTVSL VTDSSGLSAN VTYDHRALVI DGKRRVLQSG SIHYPRSTPE VWPELIRKSK 60 EGGLEVIETY VFWNYHEPIR GQYYFEGRFD LVRFVKTVQE AGLFLHLRIG PYACAEWNYG 120 GFPVWLHFIP GIQFRTTNNP FKEEMKRFLA KIVDLMKQEN LFASQGGPII LAQVENEYGN 180 VEWAYGVGGE LYVKWAADTA VNLNTSVPWV MCQQEDAPDP IINTCNGFYC DGFTPNSPSK 240 PIMWTENYSG WFLSFGYAVP FRPVEDLAFA VARFFETGGT FQNYYMYFGG TNFGRTAGGP 300 LVATSYDYDA PIDEYGFIRQ PKWGHLRELH KAIKLCEEYL ISSDPTHQKL GANLEAHIYY 360 KSSNDCAAFL ANYDSSSDAN VTFNGNVYFL PAWSVSILPD CKNVVFNTAK VISQRNIGDH 420 PFAQQKNVNE LLLASSAFSW YEEKVGISGN RSFVRPDLVE QINTTKDTSD YLWYTASIHV 480 MPGQGKEVFL NIESLGHAAL VFVNKKLVAF GYGNHDFANF SINKKIELNE GINTLDILSM 540 MVGLQNYGAW FDVAGAGLFS VILIDLKNGK RDLSSGEWIY QVGVEGEYIG LDKISLANSS 600 FWKQGSTLPV NKSLIWYKAS FNRMIMCQIT TFLAPEGKGP LALNLASMGK GQAWVNGQSI 660 GRYWSAYLAP STGCTKKCDY RGSYDASKCQ KHCGQPAQTL YHIPRTWVHP GENLLVIHEE 720 LGGDPSKISL LTKTGQDICS FVSEADPPPV DSWKPNLGVV SSSPQVQLAC ERGWHIAAIN 780 FASYGIPEGN CGSFRPGACH MDVLPIVQKA CVAQVECSLP VSSAYLGVAA GACPGLLKAL 840 AVEAHCSI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 5.0e-5 | 43 | 179 | 155 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 4.0e-12 | 768 | 846 | 83 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 2.0e-20 | 21 | 323 | 365 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 2.0e-152 | 27 | 333 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 15 | 847 | 844 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24373.1 | 0 | 18 | 847 | 28 | 861 | unknown [Picea sitchensis] |
EMBL | CBI16297.1 | 0 | 14 | 847 | 19 | 846 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002317239.1 | 0 | 21 | 847 | 36 | 848 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521428.1 | 0 | 1 | 847 | 7 | 840 | beta-galactosidase, putative [Ricinus communis] |
RefSeq | XP_002530296.1 | 0 | 2 | 847 | 6 | 842 | beta-galactosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 2.99878e-43 | 27 | 329 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.003 | 486 | 727 | 396 | 578 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 3e-35 | 21 | 345 | 11 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 3e-35 | 21 | 345 | 11 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_B | 3e-35 | 21 | 345 | 11 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 743 | 1 | 734 | 0 |
HO780602 | 677 | 71 | 734 | 0 |
HO795552 | 546 | 111 | 647 | 0 |
HO795552 | 56 | 17 | 72 | 4e-33 |
HO795552 | 83 | 72 | 150 | 4e-33 |
Sequence Alignments (This image is cropped. Click for full image.) |
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