| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10017832m |
| Family | AA7 |
| Protein Properties | Length: 542 Molecular Weight: 60299.9 Isoelectric Point: 8.7918 |
| Chromosome | Chromosome/Scaffold: 2 Start: 31118874 End: 31120499 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 75 | 529 | 0 |
| AATPKPQVIVKPLQVSHIQSVIFCSQLHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGV CPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLIDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTVPSTVTVCSSLRSLKQNLTQLVHRW QFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGAIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEAPLDVLLNRSPVTKRFYKA KSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESSIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASY INYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVKTMVDPHNFFRNEQSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 542 Download |
| MKTTPSSSLL PFAFVLLMSL HSIASADAHE NFLQCLLQNS DNSTTSISKV IYTQNNSSYS 60 SILDFTIQNR RFLTAATPKP QVIVKPLQVS HIQSVIFCSQ LHGMQVRVRS GGHDYEGLSY 120 ISHVPYVVID LINLRSISID VEKTTAWIQA GATIGELYHK IADTSGTLGF PAGVCPSVGV 180 GGHFSGGGYG ILLRKYGLAA DHVVDAHLID VKGRLLDRKS MGEDLFWAIR GGGGASFGVI 240 VAWKVELVTV PSTVTVCSSL RSLKQNLTQL VHRWQFVADK FDEDLITGVF LSSVNASTGG 300 NRTVIASFES VFLGGVDGAI PLMQKSFPEL GLVEKECTET SWVRAVLHHA RFPIEAPLDV 360 LLNRSPVTKR FYKAKSDYVR EPMPEIAFEG IFELFNEKEG GNAEIMLVPY GGKMSEIPES 420 SIPFPHRAGN IYKMSPVVYW YEEGSETAER HINWIRKLHS FLTPFVSKNP RASYINYRDI 480 DIGANKIRGY TSYKQASIWG RKYFRNNFDR LVVKTMVDPH NFFRNEQSIP SLSSWRKQKD 540 D* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG0277 | GlcD | 7.0e-12 | 80 | 247 | 176 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
| pfam08031 | BBE | 2.0e-16 | 473 | 530 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
| pfam01565 | FAD_binding_4 | 1.0e-19 | 80 | 217 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002330608.1 | 0 | 24 | 534 | 25 | 535 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332196.1 | 0 | 23 | 535 | 15 | 527 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333020.1 | 0 | 3 | 535 | 2 | 533 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333339.1 | 0 | 3 | 535 | 2 | 533 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334045.1 | 0 | 23 | 535 | 22 | 531 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 26 | 532 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 29 | 532 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 29 | 532 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 28 | 532 | 7 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 28 | 532 | 7 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
