Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10017860m |
Family | AA7 |
Protein Properties | Length: 526 Molecular Weight: 58591.9 Isoelectric Point: 8.7911 |
Chromosome | Chromosome/Scaffold: 2 Start: 31059600 End: 31061177 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 58 | 513 | 0 |
AATPKPQVIVKPLQVSHIQSVIFCSQLHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGV CPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLIDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTVPSTVTVCSSLRSLKQNLTQLVHRW QFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLFNRSPVTKRFYKA KSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHISWIRKLHSFLTPFVSKNPRASY INYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 526 Download |
MSLHSIASAD AQENFLQCLL QNSDNSTTSI SKVIYTQNNS SYSSILDFTI QNRRFLKAAT 60 PKPQVIVKPL QVSHIQSVIF CSQLHGMQVR VRSGGHDYEG LSYISHVPYV VIDLINLRSI 120 SIDVEKTTAW IQAGATIGEL YHKIADTSGT LGFPAGVCPS VGVGGHFSGG GYGILLRKYG 180 LAADHVVDAH LIDVKGRLLD RKSMGEDLFW AIRGGGGASF GVIVAWKVEL VTVPSTVTVC 240 SSLRSLKQNL TQLVHRWQFV ADKFDEDLIT GVFLSSVNAS TGGNRTVIAS FESVFLGGVD 300 GVIPLMQKSF PELGLVEKEC TETSWVRAVL HHARFPIEAS LDVLFNRSPV TKRFYKAKSD 360 YVREPMPEIA FEGIFELFNE KEGGNAEIML VPYGGKMSEI PESAIPFPHR AGNIYKMSPV 420 VYWYEEGSET AERHISWIRK LHSFLTPFVS KNPRASYINY RDIDIGANKI RGYTSYKQAS 480 IWGRKYFRNN FDRLVVVKTM VDPHNFFRNE QSIPSLSSWR KQKDD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 3.0e-12 | 63 | 516 | 473 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 2.0e-17 | 456 | 514 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 1.0e-19 | 63 | 200 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299021.1 | 0 | 6 | 519 | 24 | 533 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002300557.1 | 0 | 6 | 519 | 22 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330608.1 | 0 | 7 | 518 | 25 | 535 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 6 | 519 | 15 | 527 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 6 | 519 | 22 | 531 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 9 | 516 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 12 | 516 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 12 | 516 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 11 | 516 | 7 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 11 | 516 | 7 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777438 | 516 | 7 | 517 | 0 |
HO798639 | 324 | 37 | 356 | 0 |
DC894588 | 348 | 182 | 516 | 0 |
DY801911 | 271 | 6 | 274 | 0 |
CX666381 | 322 | 184 | 501 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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