Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10017878m |
Family | PL1 |
Protein Properties | Length: 390 Molecular Weight: 42347.5 Isoelectric Point: 8.9918 |
Chromosome | Chromosome/Scaffold: 2 Start: 35528153 End: 35529683 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 104 | 310 | 0 |
IQTNPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVD HCYLARAADGLIDVIHASTAVTISNNYFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSE GNYFMAS |
Full Sequence |
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Protein Sequence Length: 390 Download |
MVSLTTLLWL SCLLANSAST LVAYSLDSYN LPKPAVSSLK VMNVIDSCWR AKSNWAVNRK 60 ALADCVVGFG KGTLGGKYGA IYVVTDPSDD PINPKLGTLR YGVIQTNPLW IIFAKDMVIR 120 LKNELIMNSF KTIDGRGAKV EIANGPCITI QGVSHVIIHG ISIHDCKPGK SGQVRSSPDH 180 VGRRGGSDGD AIDIFASSYV WVDHCYLARA ADGLIDVIHA STAVTISNNY FEQHDKVMLL 240 GHNDQFTADK IMKVTIAFNH FGPGLIERMP RVRIGYAHVA NNRYEDWKMY AIGGSANPTI 300 FSEGNYFMAS NDQNTKEVTK RESYGGWKSW KWRTSKDVFL NGAYFVPSGY GSCAPNYSRA 360 QSFVVAPGAM VPALTANAGP LSCVVGKAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-24 | 190 | 379 | 203 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-57 | 122 | 307 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-68 | 116 | 311 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 389 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 389 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 389 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 389 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 26 | 389 | 31 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 43 | 379 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 43 | 379 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 61 | 309 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000000000003 | 120 | 311 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000003 | 135 | 307 | 140 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |