Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10017883m |
Family | GH28 |
Protein Properties | Length: 338 Molecular Weight: 36706.9 Isoelectric Point: 8.5561 |
Chromosome | Chromosome/Scaffold: 2 Start: 23749778 End: 23750980 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 329 | 0 |
WKEACTSENLSTVVISKGNYMVGSVTFKGPCKSPITLHIEGKLKAPVELERLSSQDGWIVFQDIDGLQVSGGGTFDGQGSAAWAKNDCRKTGKCSSLPIN LRFSSVTNSKMQDVTSLNSKLFHINILNCKNLSLQHISINAPANSLNTAGIHIGRSNGVHITDADIKTGDDCVSLGDGSQQISIEKVTCGPGHGISVDTL GRYHDEQPVNGVTVRNCTLKNTMNGVRVKTWPDSPSGVASEMTFEDIIMDNVSNPILIDQKYCPYG |
Full Sequence |
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Protein Sequence Length: 338 Download |
SHKEQIWISK NLKHRPQKQR PQKVLTVVRQ PEPDAARSQG AVFYVLSMEQ RPMATQMIAI 60 ASAWKEACTS ENLSTVVISK GNYMVGSVTF KGPCKSPITL HIEGKLKAPV ELERLSSQDG 120 WIVFQDIDGL QVSGGGTFDG QGSAAWAKND CRKTGKCSSL PINLRFSSVT NSKMQDVTSL 180 NSKLFHINIL NCKNLSLQHI SINAPANSLN TAGIHIGRSN GVHITDADIK TGDDCVSLGD 240 GSQQISIEKV TCGPGHGISV DTLGRYHDEQ PVNGVTVRNC TLKNTMNGVR VKTWPDSPSG 300 VASEMTFEDI IMDNVSNPIL IDQKYCPYGE CKAKILK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-65 | 59 | 334 | 281 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-67 | 34 | 330 | 300 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-68 | 59 | 326 | 273 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 68 | 331 | 264 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-113 | 59 | 334 | 277 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL32525.1 | 0 | 74 | 335 | 102 | 364 | polygalacturonase; pectinase [Arabidopsis thaliana] |
EMBL | CAA51033.1 | 0 | 74 | 335 | 101 | 363 | exopolygalacturonase [Arabidopsis thaliana] |
EMBL | CAA51692.1 | 0 | 74 | 335 | 102 | 364 | exopolygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187442.1 | 0 | 74 | 335 | 101 | 363 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
RefSeq | XP_002274096.1 | 0 | 38 | 335 | 23 | 320 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-16 | 130 | 325 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-16 | 130 | 325 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-16 | 130 | 325 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-16 | 130 | 325 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-16 | 130 | 325 | 72 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG525413 | 257 | 74 | 329 | 0 |
CU617067 | 276 | 49 | 324 | 0 |
EW731960 | 264 | 59 | 321 | 0 |
EG525404 | 251 | 74 | 323 | 0 |
EC987202 | 260 | 59 | 318 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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