y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10018086m |
Family | GH13 |
Protein Properties | Length: 405 Molecular Weight: 45778.3 Isoelectric Point: 10.0247 |
Chromosome | Chromosome/Scaffold: 2 Start: 9374795 End: 9377121 |
Description | alpha-amylase-like |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH13 | 21 | 312 | 1.8e-35 |
ESCNKKGGWYNFLKKRIPDIASAGITHVWLPPPSQSAAPQGRLYDLNASSYGSQNELKSLIQAFNKKGIKYLADIVINHRTAEKKDSRGIWCIFEGGTPD KRLDWGPFFICRDDTTYSDGRGHPDSGEPFGPAPDIDHLNPKVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITRLYMKNTMPHFAVAEKWDSLSDRQ DGKLDARQDAHRRNLKHWVQAAGRAVTAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGLLPQNAVTFIDNHDTGSTQRLWPFPSDKVMLG |
Full Sequence |
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Protein Sequence Length: 405 Download |
LLERIATLTF FQLRTLGFNW ESCNKKGGWY NFLKKRIPDI ASAGITHVWL PPPSQSAAPQ 60 GRLYDLNASS YGSQNELKSL IQAFNKKGIK YLADIVINHR TAEKKDSRGI WCIFEGGTPD 120 KRLDWGPFFI CRDDTTYSDG RGHPDSGEPF GPAPDIDHLN PKVQKELSDW MNWLKTEIGF 180 DGWRFDFVKG YAPSITRLYM KNTMPHFAVA EKWDSLSDRQ DGKLDARQDA HRRNLKHWVQ 240 AAGRAVTAFD FTTKGILQAA VQGELWRLKD SNGKPPGFIG LLPQNAVTFI DNHDTGSTQR 300 LWPFPSDKVM LGYTNKVLAP LFYDHLFDWG LKKEIGKLAA IRTKNGINTT SRVNILASQS 360 DLYVAAIDDK IITKIGPKMD LRNLIPRNFK VATSGKDYAV WQKK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK09441 | PRK09441 | 7.0e-33 | 27 | 301 | 339 | + cytoplasmic alpha-amylase; Reviewed | ||
PLN02784 | PLN02784 | 3.0e-123 | 6 | 404 | 408 | + alpha-amylase | ||
PLN02361 | PLN02361 | 1.0e-126 | 17 | 403 | 403 | + alpha-amylase | ||
cd11314 | AmyAc_arch_bac_plant_AmyA | 5.0e-134 | 17 | 353 | 348 | + Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. | ||
PLN00196 | PLN00196 | 0 | 1 | 403 | 414 | + alpha-amylase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0004556 | alpha-amylase activity |
GO:0005509 | calcium ion binding |
GO:0005975 | carbohydrate metabolic process |
GO:0043169 | cation binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PRF/SEQDB | 0 | 5 | 402 | 14 | 421 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
DDBJ | BAC76729.1 | 0 | 5 | 402 | 14 | 421 | alpha-amylase [Vigna angularis] |
RefSeq | XP_002301187.1 | 0 | 17 | 404 | 9 | 404 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327139.1 | 0 | 1 | 403 | 12 | 423 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510218.1 | 0 | 1 | 404 | 3 | 421 | alpha-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bg9_A | 0 | 12 | 403 | 1 | 402 | A Chain A, Crystal Structure Of Acetoacetate Decarboxylase (Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At 1.60 A Resolution |
PDB | 1ava_B | 0 | 12 | 403 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1ava_A | 0 | 12 | 403 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 1amy_A | 0 | 12 | 403 | 1 | 402 | A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed |
PDB | 2qpu_C | 0 | 12 | 403 | 2 | 404 | A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DN950032 | 227 | 17 | 239 | 0 |
DN950032 | 170 | 240 | 405 | 0 |
HO476908 | 397 | 17 | 403 | 0 |
DT767742 | 286 | 25 | 304 | 0 |
HO420508 | 398 | 17 | 405 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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