Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10018146m |
Family | AA7 |
Protein Properties | Length: 584 Molecular Weight: 65104.7 Isoelectric Point: 5.5925 |
Chromosome | Chromosome/Scaffold: 2 Start: 31075995 End: 31077746 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 82 | 309 | 0 |
RFSTPNTPKPQVIVTPSDVSQVQAAIKCSQKHGLEVRIRSGGHDFEGLSFVSEVPFVIIDLLNLSEISVDAEEQTTWVQAGATLGQLYYRIAEKSKNLGF PGGLCPTVGAGGHISGGGYGVMLRKFGLAADNIVDAHLIDAKGRFLDRKSMGEDLFWAIRGGGGASFGVIIAWKVRLVTVPSTATRFLVTRSLDQNATEI VHKWQYVAHKFHEDLFIEVTLSRVNSMM |
Full Sequence |
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Protein Sequence Length: 584 Download |
MKSSCTSIIP FAFILLLSYD CWVTFANIHA TSSVLDDHYD DNLFLDCLSM HSDNASSISE 60 VIYTKSHSSY SSVLNFSIQN FRFSTPNTPK PQVIVTPSDV SQVQAAIKCS QKHGLEVRIR 120 SGGHDFEGLS FVSEVPFVII DLLNLSEISV DAEEQTTWVQ AGATLGQLYY RIAEKSKNLG 180 FPGGLCPTVG AGGHISGGGY GVMLRKFGLA ADNIVDAHLI DAKGRFLDRK SMGEDLFWAI 240 RGGGGASFGV IIAWKVRLVT VPSTATRFLV TRSLDQNATE IVHKWQYVAH KFHEDLFIEV 300 TLSRVNSMMV AIFSSVFLGG FDRLLPMMQE SFPELGLTKE DCTEMSWIES VQNLAGFEKG 360 QSLDLLLDRD SQSNGVVVNG TTKAFFKGKA DYVKEPIPVN AFEGIYDKFY EEEGQIAFMV 420 LVPYGGKMSE ISESETPYPH RAGNIYQIFY GVFWGEDGAS QRHIDWLRRL YSYMTPYVSK 480 NPRAAYINYR DLDVGTNNQG YTSVEQASVW GNKYFKNNFK RLVHVKTMVD PHDFFRNEQS 540 IPPLIDNLRI SCPESTCSPS PPSEITPLLR EDSNGFPSSY SFQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0812 | MurB | 0.0007 | 92 | 233 | 153 | + UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] | ||
TIGR01679 | bact_FAD_ox | 1.0e-5 | 88 | 262 | 177 | + FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. | ||
pfam08031 | BBE | 7.0e-16 | 485 | 542 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 1.0e-19 | 91 | 285 | 203 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 1.0e-23 | 91 | 228 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002332196.1 | 0 | 22 | 544 | 14 | 524 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333020.1 | 0 | 1 | 544 | 1 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333338.1 | 0 | 1 | 544 | 1 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333339.1 | 0 | 1 | 544 | 1 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 37 | 544 | 26 | 528 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 44 | 544 | 7 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 44 | 545 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 44 | 545 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 44 | 545 | 11 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 44 | 545 | 11 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |