y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10018214m |
Family | GT19 |
Protein Properties | Length: 444 Molecular Weight: 49099.5 Isoelectric Point: 8.0255 |
Chromosome | Chromosome/Scaffold: 2 Start: 23269515 End: 23272122 |
Description | transferases, transferring glycosyl groups |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT19 | 22 | 401 | 0 |
VFIVAGEVSGDSIGSRLMSAMKKLAPLPVSFSGVGGSMMSEQGMKSLFPMEDIAVMGIWELLPHIYKFRVRLKETIEAALLFRPHAVVTVDSKGFSFRLL KQLRARYSHERLNGPAHFHYVAPSFWAWKGGEARLKNLAAFVDHILCILPNEEAICRLNGLAATFVGHPVVEDCLELNLGKGPEPCELKMEGNSEDFKNK YSVPSGAMIISLLPGSRLQEVARMLPIFAKTMELLKDSFPELITVIHVAPNRHVENYITGLIEKWPVPSILVPGGSSNLKYDAFSASRVALCTSGTVAVE LQLARLPCVVAYQAHFLTEWFIRYKAKIPYISLPNILLDSPIIPEALLQACTPDTLTHLLMELICDEGLQEQQIVAAKKV |
Full Sequence |
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Protein Sequence Length: 444 Download |
MSASSRSRSV IEGAIKDGEL RVFIVAGEVS GDSIGSRLMS AMKKLAPLPV SFSGVGGSMM 60 SEQGMKSLFP MEDIAVMGIW ELLPHIYKFR VRLKETIEAA LLFRPHAVVT VDSKGFSFRL 120 LKQLRARYSH ERLNGPAHFH YVAPSFWAWK GGEARLKNLA AFVDHILCIL PNEEAICRLN 180 GLAATFVGHP VVEDCLELNL GKGPEPCELK MEGNSEDFKN KYSVPSGAMI ISLLPGSRLQ 240 EVARMLPIFA KTMELLKDSF PELITVIHVA PNRHVENYIT GLIEKWPVPS ILVPGGSSNL 300 KYDAFSASRV ALCTSGTVAV ELQLARLPCV VAYQAHFLTE WFIRYKAKIP YISLPNILLD 360 SPIIPEALLQ ACTPDTLTHL LMELICDEGL QEQQIVAAKK VVRLLYPSER MIKNLEQQDI 420 RWTFHGYSPS MIAAATVLGF VKP* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK01021 | lpxB | 9.0e-34 | 23 | 366 | 347 | + lipid-A-disaccharide synthase; Reviewed | ||
TIGR00215 | lpxB | 2.0e-43 | 22 | 387 | 370 | + lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
pfam02684 | LpxB | 6.0e-69 | 22 | 410 | 389 | + Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. | ||
COG0763 | LpxB | 2.0e-93 | 20 | 395 | 378 | + Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] | ||
PRK00025 | lpxB | 1.0e-93 | 20 | 395 | 376 | + lipid-A-disaccharide synthase; Reviewed |
Gene Ontology | |
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GO Term | Description |
GO:0008915 | lipid-A-disaccharide synthase activity |
GO:0009245 | lipid A biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28885.1 | 0 | 14 | 443 | 2 | 431 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001140462.1 | 0 | 10 | 438 | 29 | 459 | hypothetical protein LOC100272521 [Zea mays] |
RefSeq | NP_178535.2 | 0 | 2 | 442 | 22 | 454 | transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002458499.1 | 0 | 10 | 438 | 9 | 439 | hypothetical protein SORBIDRAFT_03g034785 [Sorghum bicolor] |
RefSeq | XP_002528957.1 | 0 | 8 | 443 | 34 | 469 | Lipid-A-disaccharide synthase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY717263 | 271 | 62 | 332 | 0 |
EY663066 | 237 | 112 | 346 | 0 |
EE622357 | 258 | 69 | 326 | 0 |
EY663066 | 70 | 62 | 131 | 2e-29 |
EY717263 | 44 | 317 | 360 | 0.0000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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