| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10018711m |
| Family | GT41 |
| Protein Properties | Length: 974 Molecular Weight: 109539 Isoelectric Point: 6.7505 |
| Chromosome | Chromosome/Scaffold: 3 Start: 40504073 End: 40515121 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT41 | 453 | 741 | 0 |
| RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEIS RKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSS DMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQ | |||
| GT41 | 753 | 949 | 0 |
| PKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVKNLERSYFKMWS | |||
| Full Sequence |
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| Protein Sequence Length: 974 Download |
| MMISLQNGVS RAPLVSDRAG EAGYAAVKQE PASSLSLVSS FKGPDSHEDE DMHMALAHQM 60 YKSGSYKQAL EHSNSVYERN PLRTDNLLLL GAIYYQLHDY DMCIARNEEA LRLEPRFAEC 120 YGNMANAWKE KGDIDLAIRY YLVAIELRPN FADAWSNLAS AYMRKGRLNE AAQCCRQALA 180 LNPLLVDAHS NLGNLMKAQG LVQEAYSCYL EALRIQPTFA IAWSNLAGLF MESGDLNRAL 240 QYYKEAVKLK PTFPDAYLNL GNVYKALGMP QEAIMCYQRA VQTRPNAIAF GNLASTYYER 300 GQADMAILYY KQAIGCDPRF LEAYNNLGNA LKDVGRVDEA IQCYNQCLSL QPSHPQALTN 360 LGNIYMEWNM LPAAASYYKA TLAVTTGLSA PFNNLAVIYK QQGNYADAIS CYNEVLRIDP 420 LAADGLVNRG NTYKEIGRVT DAIQDYIRAI TIRPTMAEAH ANLASAYKDS GHVEAAIKSY 480 KQALLLRPDF PEATCNLLHT LQCVCSWEDR DRMFSEVEGI IRRQVNMSVL PSVQPFHAIA 540 YPIDPMLALE ISRKYASHCS IIASRFALPP FNHPVPIPIR LDGGLRRLRV GYVSSDFGNH 600 PLSHLMGSVF GMHNKENVEV FCYALSPNDG TEWRQRTQSE AEHFVDVSAM SSDMIAKLIN 660 EDKIQILINL NGYTKGARNE IFAMQPAPIQ VSYMGFPGTT GASYIDYLVT DEFVSPLRYA 720 HIYSEKLVHV PHCYFVNDYK QKNMDVLDPN CQPKRSDYGL PEDKFIFACF NQLYKMDPEI 780 FNTWCNILRR VPNSALWLLR FPAAGEMRLR AYAVAQGVQP DQIIFTDVAM KQEHIRRSSL 840 ADLFLDTPLC NAHTTGTDIL WAGLPMITLP LEKMATRVAG SLCLATGLGE EMIVNSMKEY 900 EERAVSLALD RQKLQALTNK LKSVRLTCPL FDTARWVKNL ERSYFKMWSL LCSGQKPQHF 960 KVTENDLDFP CDR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 2.0e-32 | 48 | 483 | 442 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| pfam13844 | Glyco_transf_41 | 4.0e-68 | 592 | 741 | 151 | + Glycosyl transferase family 41. This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. | ||
| pfam13844 | Glyco_transf_41 | 1.0e-75 | 755 | 948 | 194 | + Glycosyl transferase family 41. This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. | ||
| COG3914 | Spy | 1.0e-93 | 393 | 949 | 567 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_187074.1 | 0 | 2 | 973 | 1 | 977 | SEC (secret agent); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002270163.1 | 0 | 1 | 973 | 1 | 986 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319130.1 | 0 | 49 | 970 | 1 | 923 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002325368.1 | 0 | 102 | 973 | 1 | 873 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522031.1 | 0 | 2 | 973 | 1 | 979 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 0 | 352 | 739 | 6 | 390 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 0 | 755 | 960 | 514 | 718 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 1e-30 | 115 | 262 | 6 | 153 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 9e-24 | 149 | 294 | 6 | 152 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 4gz6_D | 2e-18 | 81 | 227 | 6 | 152 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO795247 | 461 | 514 | 974 | 0 |
| HO778725 | 450 | 525 | 974 | 0 |
| HO798232 | 450 | 9 | 456 | 0 |
| HO798232 | 401 | 123 | 522 | 0 |
| HO795247 | 52 | 462 | 513 | 3e-20 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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