Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10019202m |
Family | PL1 |
Protein Properties | Length: 662 Molecular Weight: 74952.9 Isoelectric Point: 9.1974 |
Chromosome | Chromosome/Scaffold: 3 Start: 42509539 End: 42515993 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 375 | 580 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACITIQFITNVIIHGINIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWID HNSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 662 Download |
MGLRANTHST ECAYGQIHIL RNAPPGKYTF YGMRLRANTH STECAYGQIH ILRNGPTGKY 60 TFYGLRLRAN IHYTKCAYGQ IYVFYGMHLR AECTYGQNVT KSILFPYLSN FYEIFRLRKL 120 VKHIEPLCYP IVNDNLNPSK LWALVIARPI TKTDLFDFAL RKPSRRDQIA FYLTQFRSIF 180 FSFSQFINTR RERERERATV TVKERTRESS EAATMVVSYQ IRFSVCTLLI LWLFVTANAS 240 TEKHELDSRF LKNEQLQSSN NSSMPERIEF DDEEWTHEHA VDNPDEIAAT VDMAIRNSTE 300 RRKLGYFSCG TGNPIDDCWR CDSRWYLRRK RLADCAIGFG RNAVGGRDGR YYVVSDPGDD 360 DAVNPKPGTL RHAVIQDRPL WIVFKRDMVI TLKQELIMNS FKTIDGRGVN VHIANGACIT 420 IQFITNVIIH GINIHDCKPT GNAMVRSSPS HYGWRTMADG DAISIFGSSH IWIDHNSLSN 480 CADGLIDAIM GSTAITVSNN YFTHHNEVML LGHSDSYTRD KVMQVTIAYN HFGEGLIQRM 540 PRCRHGYFHV VNNDYTHWVM YAIGGSANPT INSQGNRYLA PENTFAKEVT KRVDTSTAVW 600 RGWNWRSEGD MLLNGAYFTP SGAGSGASYA RASSLGAKSS SSVGTLTSNA GALRCRRGRL 660 C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 400 | 576 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-69 | 393 | 578 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-79 | 387 | 581 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 215 | 661 | 1 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 252 | 661 | 35 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 254 | 661 | 32 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 252 | 661 | 35 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002521130.1 | 0 | 215 | 661 | 1 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 313 | 653 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 313 | 653 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 382 | 569 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 396 | 555 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000005 | 403 | 623 | 151 | 383 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY304505 | 353 | 250 | 602 | 0 |
HO778688 | 412 | 238 | 649 | 0 |
DY303215 | 338 | 213 | 548 | 0 |
DY264085 | 385 | 209 | 591 | 0 |
FC881088 | 302 | 209 | 510 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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