Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10019376m |
Family | CE8 |
Protein Properties | Length: 605 Molecular Weight: 66261.9 Isoelectric Point: 8.1442 |
Chromosome | Chromosome/Scaffold: 3 Start: 11399185 End: 11403123 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 290 | 586 | 0 |
DIIVSKDGTGTVKTIAEAIKKAPENSDRRTIIYVRAGRYEESNLKVGRKKRNLMFIGDGKGKTIITGGRNVFDKLTTFHTASFAATGAGFIARDMTFENF AGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMANQKNTITAQNRKDPNQNTGISIHDCSL YAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIY |
Full Sequence |
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Protein Sequence Length: 605 Download |
MGYGRLQPSS DPGGSSFRED QPGHATSAPQ PSSRSRKKLI LLSVLSFALI IASAVSAVLL 60 VGLKTSAVGP TIGHKPTQAI SRTCSKTLYP NLCVSSLLNF PGSLTASEQD LVHISFNMTL 120 QHFSRALYFT SGISYLQMDP HVRSAFDDCL ELLDDSVDAL SRSLGSVLLL PGGDINKRED 180 VLTWLSAALT NHDTCSEGFE ELNGPVKDQV SDKLKDLSEL VSNCLAIFSA GGDSDDFSGV 240 PIQNRRRRLL SSSEEDDTWG ENDDDDNVPR WVSRETRRLL SLPVPHIQAD IIVSKDGTGT 300 VKTIAEAIKK APENSDRRTI IYVRAGRYEE SNLKVGRKKR NLMFIGDGKG KTIITGGRNV 360 FDKLTTFHTA SFAATGAGFI ARDMTFENFA GPAKHQAVAL RVGADHAVVY RCNVIGYQDT 420 LYVHSNRQFY RECDIYGTVD FIFGNAAVVL QKCAIYARKP MANQKNTITA QNRKDPNQNT 480 GISIHDCSLY AAPDLQASKG SIPTYLGRPW KLYSRVVYML TYMGDHIQPR GWLEWNGDFA 540 LDTLYYGEYM NSGPGSAVGH RVRWPGYRVI TSATEASKFT VSQFIYGSSW LPSTGVAFLG 600 GLSV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02201 | PLN02201 | 5.0e-164 | 139 | 604 | 470 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 9.0e-165 | 54 | 602 | 566 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-180 | 50 | 602 | 555 | + pectinesterase/pectinesterase inhibitor | ||
PLN02484 | PLN02484 | 0 | 1 | 604 | 609 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 290 | 588 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42038.1 | 0 | 1 | 604 | 1 | 617 | pectin methylesterase 1 [Pyrus communis] |
RefSeq | NP_200149.1 | 0 | 1 | 603 | 1 | 586 | PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002278061.1 | 0 | 72 | 604 | 68 | 597 | PREDICTED: similar to pectin methylesterase 1 [Vitis vinifera] |
RefSeq | XP_002317777.1 | 0 | 75 | 602 | 32 | 550 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321999.1 | 0 | 1 | 604 | 1 | 605 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 290 | 602 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 287 | 602 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-17 | 294 | 593 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-17 | 294 | 593 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-16 | 294 | 593 | 12 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |