Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10019597m |
Family | GH28 |
Protein Properties | Length: 545 Molecular Weight: 59867.3 Isoelectric Point: 8.3681 |
Chromosome | Chromosome/Scaffold: 3 Start: 48762649 End: 48765718 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 146 | 494 | 0 |
YSSDGGAQLYVPAGKWLTGSFNLISHFTLYLHKDAFLLASQDLNEWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGALWWQQFHK GKLKYTRPYLIEFMYTDNIQISSLTLLNSPSWNVHPVYSSNILVQGITIIAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPT KQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDIKAINTESGVRIKTAVGRGGYVKDIYVRGMTMHTMKWAFWMTGNYGSHADNHYDPKALPVIQGIN YRDIVADNVSMAARLEGISGDPFTGICIANATIGMAAKHKKVPWTCADI |
Full Sequence |
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Protein Sequence Length: 545 Download |
MAAVADQDMM RIESLIFDKK AHGRPHQYYQ NQTREENSRS GSAKAIVGNT TKQHSKITYL 60 ITTMELSRMS RLRSQVTKLV PLLIVVALLS QRGAESRKAR RLDSFEYNAI SCRAHSASIT 120 DFGGVGDGKT SNTKAFKDAI NQLSQYSSDG GAQLYVPAGK WLTGSFNLIS HFTLYLHKDA 180 FLLASQDLNE WPVIKPLPSY GRGRDAAAGR YTSLIFGTNL TDVIVTGDNG TIDGQGALWW 240 QQFHKGKLKY TRPYLIEFMY TDNIQISSLT LLNSPSWNVH PVYSSNILVQ GITIIAPVTS 300 PNTDGINPDS CTNTRIEDCY IVSGDDCVAV KSGWDEYGIA YGMPTKQLVI RRLTCISPYS 360 ATIALGSEMS GGIQDVRAED IKAINTESGV RIKTAVGRGG YVKDIYVRGM TMHTMKWAFW 420 MTGNYGSHAD NHYDPKALPV IQGINYRDIV ADNVSMAARL EGISGDPFTG ICIANATIGM 480 AAKHKKVPWT CADIGGMTSG VTPPPCELLP DQGPEKIRAC DFPTESLPID MVEMKKCTYR 540 INYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-20 | 119 | 412 | 304 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-29 | 116 | 506 | 410 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-30 | 221 | 413 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 2.0e-30 | 114 | 440 | 336 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 1.0e-59 | 117 | 412 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 94 | 543 | 40 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002277736.1 | 0 | 94 | 543 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 64 | 544 | 1 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 88 | 544 | 14 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 64 | 544 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 115 | 478 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 115 | 478 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 115 | 478 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 115 | 478 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000007 | 133 | 415 | 26 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY297578 | 357 | 57 | 412 | 0 |
CX665539 | 310 | 55 | 364 | 0 |
CX665540 | 301 | 245 | 545 | 0 |
FC882484 | 299 | 57 | 355 | 0 |
CX665315 | 295 | 246 | 540 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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