| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10019612m |
| Family | GT5 |
| Protein Properties | Length: 543 Molecular Weight: 59146.8 Isoelectric Point: 5.9713 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11647119 End: 11652163 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 153 | 542 | 0 |
| NIVFVTAEAAPYSKTGGLGDVCGSLPVALAARGHRVMVVSPRYLNGTAADENFTLAKDLGCCMKICCFGGEQEIAFFHEYREGVDWVFVDHPSYHRPGNP YGDINGAFGDNQFRYTLLCYAACEAPLVLPLGGFTYGEKCLFLVNDWHAGLVPVLLASKYRPHGVYKDARSILVIHNLSHQGVEPAATYKNLGLPSEWYG ALEWVFPTWARTHALDTGEAVNVLKGAIVTADRLLTVSKGYSWEITTVEGGYGLHEILSSRKSVLNGITNGIDITEWNPSSDEHIASHYSIDDLSGKVQC KIALQKELGLPIRPDCPLIGFIGRLDYQKGIDLIRLAAPEILADDIQFVMLGSGDPQFESWMRDTEATYKDKYRGWVGFNVPISHRITAG | |||
| Full Sequence |
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| Protein Sequence Length: 543 Download |
| MESLQVTRLL SWKSFLNTAA KAGTTRFRAT TQLGFPPLSK KATKNGFLMI RRSFTNASTG 60 SGSSSGGTDA VSGNISSHDS SSPPVEDEKD ENKPGYLLGQ EKDGSGLVIG FHFIPPSGDH 120 EVIDSSKDID GYGVKKIEDV EGEDKAQTRV SYNIVFVTAE AAPYSKTGGL GDVCGSLPVA 180 LAARGHRVMV VSPRYLNGTA ADENFTLAKD LGCCMKICCF GGEQEIAFFH EYREGVDWVF 240 VDHPSYHRPG NPYGDINGAF GDNQFRYTLL CYAACEAPLV LPLGGFTYGE KCLFLVNDWH 300 AGLVPVLLAS KYRPHGVYKD ARSILVIHNL SHQGVEPAAT YKNLGLPSEW YGALEWVFPT 360 WARTHALDTG EAVNVLKGAI VTADRLLTVS KGYSWEITTV EGGYGLHEIL SSRKSVLNGI 420 TNGIDITEWN PSSDEHIASH YSIDDLSGKV QCKIALQKEL GLPIRPDCPL IGFIGRLDYQ 480 KGIDLIRLAA PEILADDIQF VMLGSGDPQF ESWMRDTEAT YKDKYRGWVG FNVPISHRIT 540 AG* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08323 | Glyco_transf_5 | 2.0e-73 | 154 | 410 | 257 | + Starch synthase catalytic domain. | ||
| COG0297 | GlgA | 2.0e-92 | 153 | 542 | 398 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 4.0e-113 | 153 | 542 | 398 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 5.0e-129 | 153 | 542 | 393 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-144 | 153 | 542 | 390 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV25893.1 | 0 | 1 | 542 | 1 | 513 | starch synthase isoform I [Manihot esculenta] |
| EMBL | CBI23015.1 | 0 | 97 | 541 | 2 | 447 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197818.1 | 0 | 1 | 542 | 1 | 532 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002277372.1 | 0 | 97 | 541 | 67 | 512 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321996.1 | 0 | 24 | 542 | 23 | 529 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 153 | 542 | 11 | 401 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3vue_A | 0 | 153 | 542 | 11 | 401 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 153 | 542 | 2 | 366 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 153 | 542 | 2 | 366 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 153 | 542 | 2 | 366 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO595058 | 374 | 169 | 542 | 0 |
| GO842198 | 336 | 176 | 511 | 0 |
| DV161524 | 314 | 138 | 451 | 0 |
| EX379432 | 296 | 213 | 508 | 0 |
| GO885224 | 337 | 138 | 474 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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