Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10019941m |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 52912.1 Isoelectric Point: 5.9034 |
Chromosome | Chromosome/Scaffold: 3 Start: 1544509 End: 1547621 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 431 | 0 |
SEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGE LKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQ LIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYR DMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDIT |
Full Sequence |
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Protein Sequence Length: 481 Download |
MESLKTAKRT QVICIILLVG IIISLNTNGV ESRKARNSDW FEYSAISCRA HSASLEEFGG 60 VGDGITSNTK AFKAAIDHLS RFQSEGGSQL FVPPGKWLTG SFNLTSHFTL FLHKDAVLLA 120 SQDEKEWPVI EPLPSYGRGR DTEGGRYSSL IFGTNLTDVV ITGDNGTIDG QGELWWRKFR 180 AGELKYTRPY LIEIMYSQNI QISNLTLINS PSWNVHPVYS SSVIVQGITI LAPVTSPNTD 240 GINPDSCTNT RIEDCYIVSG DDCVAVKSGW DQYGIAYGMP TKQLIIRRLT CISPFSAVIA 300 LGSEMSGGIQ DVRAEDITAI DSESGVRIKT AVGRGGFVKD VYVRRMTMKT MKWAFWITGS 360 YGSHPDNNYD PHALPVIQNI NYRDMVAENV TMAARLEGIA GDPFTGICIS NVTIELTNKP 420 KKLQWNCTDI TGISSGVTPK PCELLPDHEP AKTTECNFPD NRLPVENMEV QMCSYKANYL 480 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-19 | 57 | 442 | 411 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-22 | 52 | 415 | 383 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-25 | 50 | 447 | 416 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-29 | 151 | 442 | 299 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-54 | 33 | 349 | 348 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278930.1 | 0 | 1 | 480 | 1 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 1 | 475 | 1 | 475 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301370.1 | 0 | 25 | 480 | 15 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 1 | 474 | 1 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 1 | 480 | 1 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 51 | 415 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 51 | 415 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 51 | 415 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 51 | 415 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-19 | 97 | 388 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |