Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10020162m |
Family | GH28 |
Protein Properties | Length: 444 Molecular Weight: 48127.6 Isoelectric Point: 8.1973 |
Chromosome | Chromosome/Scaffold: 3 Start: 1015286 End: 1020829 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 418 | 0 |
SGGTLLYVPPGVYLTGSFNLTSHMTLYLAKGAVIKATQDTWNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGAIWWNMWRQRTL PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGI TIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDV WGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGS |
Full Sequence |
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Protein Sequence Length: 444 Download |
MFRFLVTLSI LLSYFNCFSL ASVVTCSGIV PMRYRNDKIS ITDFGGVGDG KTLNTKAFRE 60 AIYRIQHLRR SGGTLLYVPP GVYLTGSFNL TSHMTLYLAK GAVIKATQDT WNWPLIAPLP 120 SYGRGRERPG GRYMSFIHGD GLQDVVITGE NGTIDGQGAI WWNMWRQRTL PFTRPNLIEF 180 MNSRSIIISN VIFQNSPFWN IHPVYCSNVV IRYVTILAPA DSPNTDGIDP DSSSNVCIED 240 SYISTGDDLV AVKSGWDEYG IAYGHPSSGI TIRRVTGSSP FSGIAVGSET SGGVENVLAE 300 HINLYNVGVG IHVKTNIGRG GFIRNITVSD VYMENARKGI KIAGDVGDHP DDKFNPNALP 360 VVNGITIKDV WGTKVQQSGL IQGLKNSPFT GICLSNINLQ GVAGPTSPPL KCSDVSGSAY 420 QVKPWPCSEL SSSQQTGACS NHF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-26 | 36 | 438 | 420 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-28 | 10 | 427 | 452 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 5.0e-32 | 39 | 401 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-35 | 75 | 419 | 357 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-54 | 21 | 336 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 8 | 443 | 4 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 441 | 1 | 445 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 8 | 443 | 4 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 32 | 443 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 8 | 443 | 13 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.00264e-43 | 38 | 401 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.00264e-43 | 38 | 401 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.00264e-43 | 38 | 401 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.00264e-43 | 38 | 401 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-20 | 82 | 370 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |