Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10021167m |
Family | CE8 |
Protein Properties | Length: 324 Molecular Weight: 36193.9 Isoelectric Point: 8.385 |
Chromosome | Chromosome/Scaffold: 3 Start: 5609608 End: 5612260 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 58 | 159 | 6.6e-29 |
ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNIS FK | |||
CE8 | 157 | 314 | 0 |
SFKDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKSPDEKTGFAFVRCRVTGTGPLYVGRAMGQYSRIVYSFTYFDDLV AHGGWDDWDHISNKNKTAFFGVYKCWGPGAANVRGASWARELDYESAHPFLVKSFING |
Full Sequence |
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Protein Sequence Length: 324 Download |
MLFNLMSSVT CFSFFHLYIV TSFLSLALFQ VTISATAQAA NSTKHHHMWI GPVGHRVITV 60 DVNGSGEFKS VQAAVDSVPE RNRMNVLIQI SAGCYIEKVT VPVSKPYITF QGAGRDRTVI 120 EWHDRACDRG ANGQQLRTYQ TASVTVFANY FSARNISFKD TLCDDAGRHY FKECYIEGSI 180 DFIFGNGRSM YKDCELHSIA TRFGSIAAHD RKSPDEKTGF AFVRCRVTGT GPLYVGRAMG 240 QYSRIVYSFT YFDDLVAHGG WDDWDHISNK NKTAFFGVYK CWGPGAANVR GASWARELDY 300 ESAHPFLVKS FINGRHWIAP SDA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-81 | 56 | 320 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-81 | 57 | 323 | 311 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-95 | 54 | 318 | 302 | + pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-107 | 56 | 320 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 17 | 323 | 343 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 2 | 323 | 1 | 360 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 13 | 323 | 6 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 23 | 323 | 19 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 31 | 323 | 27 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 43 | 320 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-32 | 53 | 318 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-24 | 63 | 318 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000003 | 67 | 308 | 43 | 354 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000002 | 68 | 198 | 18 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000002 | 68 | 198 | 18 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |