Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10022063m |
Family | GH19 |
Protein Properties | Length: 231 Molecular Weight: 24941 Isoelectric Point: 5.2139 |
Chromosome | Chromosome/Scaffold: 3 Start: 36825382 End: 36828004 |
Description | homolog of carrot EP3-3 chitinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 30 | 230 | 0 |
QVANLVTPEFFDGIKNVADPSCAGKSFYTRNAFLNAANSYPEFGSGSADESKREIAAFFAHVTHETGHLCYVEEIDKSNAYCDTSNTQYPCVPGKFYYGR GPIQLTGNGNYGAAGQAIGFDGLNSPETVANDPVISFKTALWFWMTNVHSVVNQGFGATIQRINGALECGGKQPDKVQARIGYYTDYCNKFGVSPGENLS C |
Full Sequence |
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Protein Sequence Length: 231 Download |
MALFNLNKDS PTFLLFAIFT LAIPTIVLSQ VANLVTPEFF DGIKNVADPS CAGKSFYTRN 60 AFLNAANSYP EFGSGSADES KREIAAFFAH VTHETGHLCY VEEIDKSNAY CDTSNTQYPC 120 VPGKFYYGRG PIQLTGNGNY GAAGQAIGFD GLNSPETVAN DPVISFKTAL WFWMTNVHSV 180 VNQGFGATIQ RINGALECGG KQPDKVQARI GYYTDYCNKF GVSPGENLSC * 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00442 | lysozyme_like | 5.0e-9 | 102 | 175 | 74 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
COG3179 | COG3179 | 7.0e-10 | 85 | 196 | 146 | + Predicted chitinase [General function prediction only] | ||
pfam00182 | Glyco_hydro_19 | 4.0e-97 | 34 | 230 | 232 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 2.0e-105 | 35 | 230 | 230 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC35981.1 | 0 | 1 | 230 | 1 | 231 | chitinase CHI1 [Citrus sinensis] |
GenBank | ACD69683.1 | 0 | 31 | 219 | 52 | 240 | chitinase [Mangifera indica] |
GenBank | ACZ52964.1 | 0 | 1 | 230 | 1 | 227 | chitinase [Dimocarpus longan] |
RefSeq | XP_002326040.1 | 0 | 31 | 230 | 69 | 270 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330662.1 | 0 | 22 | 230 | 66 | 275 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3hbh_A | 0 | 31 | 230 | 2 | 204 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3hbe_X | 0 | 31 | 230 | 2 | 204 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine |
PDB | 3hbd_A | 0 | 31 | 230 | 2 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
PDB | 2z37_D | 0 | 38 | 230 | 10 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
PDB | 2z37_C | 0 | 38 | 230 | 10 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |