Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10023493m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42713.5 Isoelectric Point: 8.8498 |
Chromosome | Chromosome/Scaffold: 3 Start: 29404073 End: 29405738 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 383 | 0 |
NDACKWDGNSGVLIPRGTFLLGTVTFTGPCKKSTAFQIKGVIRAPSDLKRMSNPDQWIGFRYVDRLLVNGRGTVDGQGASAWSFNSCAEDPNCPSLPISM VFNFVTNSRISGITSVNSKNAHISLYGCHKVSIDNIKITAPYQSPNTDGIKIGDSKGIKITHSSIGTGDDCIALLSGSTNINVTDVSCGPGHGISVGSLG RYANERNVHGLAVRNCTFRGTTNGVRIKTWASPQANVASGFTFENIFMSNVENPIVIDQMYCPHGSCNQKITSNVQIKDVTYRNIWGTSSTKVAVNFQCS KTFPCENIVLQDIYLVHNGRDGAATSSCNFVD |
Full Sequence |
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Protein Sequence Length: 397 Download |
MPSSRVLLFL MFLGFAVVTK VQGGIKIFDV TKYGAIGDGR IDNTKAFLRA WNDACKWDGN 60 SGVLIPRGTF LLGTVTFTGP CKKSTAFQIK GVIRAPSDLK RMSNPDQWIG FRYVDRLLVN 120 GRGTVDGQGA SAWSFNSCAE DPNCPSLPIS MVFNFVTNSR ISGITSVNSK NAHISLYGCH 180 KVSIDNIKIT APYQSPNTDG IKIGDSKGIK ITHSSIGTGD DCIALLSGST NINVTDVSCG 240 PGHGISVGSL GRYANERNVH GLAVRNCTFR GTTNGVRIKT WASPQANVAS GFTFENIFMS 300 NVENPIVIDQ MYCPHGSCNQ KITSNVQIKD VTYRNIWGTS STKVAVNFQC SKTFPCENIV 360 LQDIYLVHNG RDGAATSSCN FVDGDSYGNQ KPPSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-81 | 5 | 396 | 398 | + polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-86 | 1 | 396 | 396 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-86 | 61 | 382 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-86 | 26 | 396 | 379 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-124 | 6 | 395 | 398 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 24 | 396 | 31 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 10 | 396 | 14 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 24 | 396 | 31 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 8 | 396 | 10 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314146.1 | 0 | 1 | 396 | 1 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-21 | 121 | 332 | 115 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00000000000001 | 125 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 125 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 125 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00000000000001 | 125 | 339 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |