Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10023712m |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43044.9 Isoelectric Point: 7.373 |
Chromosome | Chromosome/Scaffold: 3 Start: 46025851 End: 46027669 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 397 | 0 |
AKACGSGAPAKVLIPSGTFLTGPVVFSGPCKSAITVEVRGIVKATTDLKEYADGDWILFENIDGLLLTGGGTFDGQGAASWKLKDSNPQHSATKCDLLPI SIKFNHVNNSVVTGINSLNSKGFHILLVFCQNFTASNLNITAPDESPNTDGIHLSLSSFVNITNSKIGTGDDCVSIGHGSTDISVSRITCGPGHGISVGS LGNKPDEMDVNGITVFNCTLINTTNGLRIKTKRGSASLKASRIFYDNIIMDKVKNPIIIDQNYGAKKNEPSRVKITDVHYKNIKGTSITNVGVNLNCSSV VPCDGVELVGVDLAFDVGSAKKAEANLPFSSSCANAEAK |
Full Sequence |
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Protein Sequence Length: 408 Download |
MARQERFVVK AVLLLGLTFL SSVVQGAEPN YSLYFDVTKF GAEANGDKNN AQAFTETWAK 60 ACGSGAPAKV LIPSGTFLTG PVVFSGPCKS AITVEVRGIV KATTDLKEYA DGDWILFENI 120 DGLLLTGGGT FDGQGAASWK LKDSNPQHSA TKCDLLPISI KFNHVNNSVV TGINSLNSKG 180 FHILLVFCQN FTASNLNITA PDESPNTDGI HLSLSSFVNI TNSKIGTGDD CVSIGHGSTD 240 ISVSRITCGP GHGISVGSLG NKPDEMDVNG ITVFNCTLIN TTNGLRIKTK RGSASLKASR 300 IFYDNIIMDK VKNPIIIDQN YGAKKNEPSR VKITDVHYKN IKGTSITNVG VNLNCSSVVP 360 CDGVELVGVD LAFDVGSAKK AEANLPFSSS CANAEAKFEG KISPPPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-74 | 37 | 404 | 373 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-77 | 8 | 407 | 405 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-78 | 27 | 407 | 393 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-90 | 62 | 391 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-122 | 1 | 407 | 415 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 1 | 407 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 1 | 407 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 25 | 407 | 47 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 52 | 407 | 2 | 352 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 8 | 407 | 3 | 412 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 125 | 341 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-17 | 103 | 391 | 33 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 103 | 391 | 33 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 103 | 391 | 33 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-17 | 103 | 391 | 33 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |