Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10023981m |
Family | GH5 |
Protein Properties | Length: 401 Molecular Weight: 45015.9 Isoelectric Point: 9.1173 |
Chromosome | Chromosome/Scaffold: 3 Start: 21928044 End: 21930467 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 22 | 327 | 1.1e-32 |
NGSPFLFNGFNSYWMMNVASQPSQRYKVSDVFRQAAAAGLSVCRTWAFSDGGYGALQQSPGVYNEPVFQGLDFVISEARKYGIRLILSLSNNYHDFGGRP QYVNWARAAGASVNSDDEFYTNAIVKGYYKNHVKKVLTRINTITRIAYKDDPTIMAWELINEARCQADYSGKTLNNWVQEMASYVKSIDNKHLLEIGLEG FYGDSIPDKKQFNPGYQVGTDFISNNMIKEIDFTTIHAYPDQWLPGKNDYAQMQFVQKWLASHWTDSKTILKKPLVFSEFGKSSKEAGFSINVRDSFLNT IYMNIY |
Full Sequence |
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Protein Sequence Length: 401 Download |
SAQTLPAQAG FVQTRGTQFV LNGSPFLFNG FNSYWMMNVA SQPSQRYKVS DVFRQAAAAG 60 LSVCRTWAFS DGGYGALQQS PGVYNEPVFQ GLDFVISEAR KYGIRLILSL SNNYHDFGGR 120 PQYVNWARAA GASVNSDDEF YTNAIVKGYY KNHVKKVLTR INTITRIAYK DDPTIMAWEL 180 INEARCQADY SGKTLNNWVQ EMASYVKSID NKHLLEIGLE GFYGDSIPDK KQFNPGYQVG 240 TDFISNNMIK EIDFTTIHAY PDQWLPGKND YAQMQFVQKW LASHWTDSKT ILKKPLVFSE 300 FGKSSKEAGF SINVRDSFLN TIYMNIYNLA RNGGAIGGGM VWQLMAEGMQ PYFDGYEIVL 360 SQNPSTRSVI VQQSNKMTAL AHILTYGKNL MGKSHYQLHG * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG2730 | BglC | 0.007 | 18 | 185 | 174 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
pfam02449 | Glyco_hydro_42 | 0.007 | 53 | 191 | 162 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam00150 | Cellulase | 3.0e-5 | 22 | 306 | 294 | + Cellulase (glycosyl hydrolase family 5). | ||
COG3934 | COG3934 | 3.0e-22 | 19 | 344 | 335 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAC08208.1 | 0 | 11 | 383 | 38 | 409 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
EMBL | CBI17044.1 | 0 | 2 | 383 | 86 | 449 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270023.1 | 0 | 2 | 383 | 23 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272344.1 | 0 | 9 | 383 | 29 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272567.1 | 0 | 2 | 383 | 23 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 11 | 381 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 15 | 369 | 17 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 15 | 369 | 17 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 15 | 369 | 17 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 15 | 369 | 17 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JK974111 | 374 | 9 | 381 | 0 |
HO794665 | 383 | 1 | 381 | 0 |
DV157927 | 288 | 93 | 380 | 0 |
DT755744 | 274 | 5 | 278 | 0 |
DY974769 | 260 | 9 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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