Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10024027m |
Family | CE8 |
Protein Properties | Length: 369 Molecular Weight: 40929.5 Isoelectric Point: 9.7106 |
Chromosome | Chromosome/Scaffold: 3 Start: 46777711 End: 46780178 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 83 | 366 | 0 |
ITVCQNGTGDFKTIREAIKSIPPYNTRRVILEIKPGVYREKVSIPKTLPFVTFLGNSSDPPTITGNDTASVPGSDGKPLKTFQSATVAVDADYFVAINMK FQNTAPHVVGSMGEQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGYGRSLYENCYLNSTAKKKASLTAQKRSSSSIDSGFSF KNNVVTGSGLVYLGRAWGDYSRVVFSFTFMDKIVLPQGWSDWGDQKRDTRVFYGEYKCSGPGANLTGRVPWARILTDEEAKPFI |
Full Sequence |
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Protein Sequence Length: 369 Download |
MASKSYFQFI LFLLSLSNFS LKCCSLRNVD KETDFNKWVS WNIQNHQKKA LWQAESVSQQ 60 VPGAGGRVLD GKLWKAETNK VRITVCQNGT GDFKTIREAI KSIPPYNTRR VILEIKPGVY 120 REKVSIPKTL PFVTFLGNSS DPPTITGNDT ASVPGSDGKP LKTFQSATVA VDADYFVAIN 180 MKFQNTAPHV VGSMGEQAVA LRISGTKAAF YNCSFYGAQD TLYDHKGLHY FNNCFIQGSV 240 DFIFGYGRSL YENCYLNSTA KKKASLTAQK RSSSSIDSGF SFKNNVVTGS GLVYLGRAWG 300 DYSRVVFSFT FMDKIVLPQG WSDWGDQKRD TRVFYGEYKC SGPGANLTGR VPWARILTDE 360 EAKPFIGT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-98 | 83 | 366 | 284 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-99 | 71 | 367 | 299 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 8.0e-103 | 75 | 367 | 296 | + pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-118 | 36 | 366 | 335 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-136 | 83 | 366 | 286 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 1 | 368 | 1 | 369 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 35 | 368 | 70 | 399 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 35 | 368 | 69 | 398 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 91 | 368 | 1 | 278 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330522.1 | 0 | 69 | 365 | 65 | 367 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 83 | 365 | 9 | 296 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99993e-41 | 85 | 365 | 7 | 292 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-18 | 71 | 365 | 24 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-18 | 93 | 365 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-18 | 93 | 365 | 18 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |