Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10024124m |
Family | CE8 |
Protein Properties | Length: 322 Molecular Weight: 35982.2 Isoelectric Point: 6.2351 |
Chromosome | Chromosome/Scaffold: 3 Start: 46641581 End: 46643048 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 17 | 309 | 0 |
ISVSRSGGGNFTKIQDAINFIPVNNDQWIRIQISPEIYQEKVTIPQNKPCIFLEGASSRTTKIQWGDHDTTISSPTFTSLSENVVAKGILFQNTYNVPPS YRQNQERMEVKQALAARISGDKSAFYNCGFAGLQDTLFDDHGRHYFHQCYIEGAIDFIFGNGQSIYHNCAVNVTLKEYLPEKDYGYITAQGRNSTDDPSG FVFTSCQFLGSGKAYLGRAYGAFSRVIIVNSVLTDMVEPQGWNAWNHVEHEENIEYAEARCRGAGADTSKRVSWEKHLSVDEVKKFTDSSFID |
Full Sequence |
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Protein Sequence Length: 322 Download |
LDCKLNNANP LKVAYTISVS RSGGGNFTKI QDAINFIPVN NDQWIRIQIS PEIYQEKVTI 60 PQNKPCIFLE GASSRTTKIQ WGDHDTTISS PTFTSLSENV VAKGILFQNT YNVPPSYRQN 120 QERMEVKQAL AARISGDKSA FYNCGFAGLQ DTLFDDHGRH YFHQCYIEGA IDFIFGNGQS 180 IYHNCAVNVT LKEYLPEKDY GYITAQGRNS TDDPSGFVFT SCQFLGSGKA YLGRAYGAFS 240 RVIIVNSVLT DMVEPQGWNA WNHVEHEENI EYAEARCRGA GADTSKRVSW EKHLSVDEVK 300 KFTDSSFIDH DGWIAKLPSV L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-89 | 16 | 319 | 308 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-90 | 11 | 314 | 304 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-95 | 8 | 314 | 318 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 2.0e-113 | 7 | 318 | 312 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 1.0e-130 | 8 | 318 | 312 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 1 | 318 | 25 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515255.1 | 0 | 1 | 318 | 26 | 335 | Pectinesterase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 1 | 320 | 350 | 662 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 13 | 320 | 36 | 339 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-39 | 13 | 314 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-32 | 19 | 314 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-20 | 17 | 318 | 8 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-20 | 17 | 318 | 8 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-20 | 17 | 318 | 8 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV984237 | 297 | 26 | 314 | 0 |
EX315894 | 282 | 41 | 314 | 0 |
EX317112 | 280 | 43 | 314 | 0 |
AW036464 | 216 | 77 | 291 | 0 |
EE476551 | 223 | 14 | 236 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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