Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10024556m |
Family | GH28 |
Protein Properties | Length: 604 Molecular Weight: 65305.9 Isoelectric Point: 6.4972 |
Chromosome | Chromosome/Scaffold: 3 Start: 46855733 End: 46859065 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 235 | 562 | 0 |
ACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPG PCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGH GISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSP PMHFACSDTVPCTNLTLSEVELLPAKGD |
Full Sequence |
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Protein Sequence Length: 604 Download |
MQSLLRPLIH CIENIERLKM AYSRRVSILI FCICFLGFIL SVQARRHHSI KHKHTHHHNT 60 YEFSETPSPS PSPQLTDPSN NTNAHNSANS PSPSPEADSP SDDWNADNST AASSPSPEPS 120 NPPSGYNAMR APSPSTEPAN PPNKGNGYDS PGAPSASHAP TNPLNGYNFT RTPSPSSGPA 180 APPNKGNDYN SPGAPTTSPA NSPDDGNVID VRKFGAVGDG ISDDTEAFKM TWDSACQKDF 240 AVIHVPYGFS FMIQSTIFTG PCQGSIVFQV DGTIMPPDGP ESWLQKNSKR QWLVFYKINE 300 LSLQGGGTID GRGHKWWDLP CKPHKGINGT TSPGPCDSPI ALRFFMSSNL TVQRLRIKDS 360 PQFHFRFDNC KNVHIESIHI TAPALSPNTD GIHIENTNGV EIYNSVISNG DDCVSIGSGC 420 YDVDIRNITC GPGHGISIGS LGNHNSRACV SNITVRDSVI KVSNNGVRIK TWQGGSGAVS 480 GITFSNIHMN NVRNPIIIDQ YYCLTKDCTN KTSAVYVSDI LYSNIKGTYD IRSPPMHFAC 540 SDTVPCTNLT LSEVELLPAK GDLVSDPFCW NAYGDLPTLT IPPVSCLLEG IPRSLLDNEI 600 DHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-81 | 196 | 583 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-82 | 207 | 587 | 389 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-90 | 256 | 556 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-97 | 209 | 556 | 352 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-123 | 198 | 583 | 389 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 194 | 603 | 74 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 194 | 603 | 55 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 208 | 603 | 68 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 208 | 603 | 42 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 20 | 603 | 1 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-26 | 271 | 560 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-26 | 271 | 560 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-26 | 271 | 560 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-26 | 271 | 560 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-26 | 271 | 560 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |