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Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10024772m |
Family | CBM57 |
Protein Properties | Length: 1071 Molecular Weight: 121629 Isoelectric Point: 7.4754 |
Chromosome | Chromosome/Scaffold: 7 Start: 5010781 End: 5016990 |
Description | Di-glucose binding protein with Kinesin motor domain |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 77 | 220 | 1.8e-29 |
LFVNAGGEASDEVDCSMKFLGDTYFEGGNVLRTNEHICDAGDYPFIYQSARFGNFCYRFNDIPPGHYYVDLHFAEIINTNGPKGMRVFNVFVQEEKVVSD FDIFSIVGANKPLQLVDIRVSVKEEGTVVVRFEGISGSPAVSGI |
Full Sequence |
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Protein Sequence Length: 1071 Download |
MENIQLNTSQ LIPENLIVDK GFDREKDVNL NQENRASAME EEDGNEESFV DSMLCDSNSR 60 LIPCGFIRSY CTGEFVLFVN AGGEASDEVD CSMKFLGDTY FEGGNVLRTN EHICDAGDYP 120 FIYQSARFGN FCYRFNDIPP GHYYVDLHFA EIINTNGPKG MRVFNVFVQE EKVVSDFDIF 180 SIVGANKPLQ LVDIRVSVKE EGTVVVRFEG ISGSPAVSGI CIRRASKVLS VPQTSHEFLK 240 CNNCAAEIEV PSAQKKIMRI KATEKYEKKI EELNKQFQLK TNECHEAWMS LTAANEQLEK 300 VRMELDNKAF QTLTLDQTVE KQAENLINIT SRYECDKKYW AAAVSDLQEK VKMMKKEHSQ 360 LSREAHECAD SIPELNKMVI GVQALVAQCE DFKMKYSEEQ AKRKELYNQI QQTRGNIRVF 420 CRCRPLNKVE ISAGCATVVD FDAAKDGELG VLTGSSTRKT FKFDRVFTPN DGQVDVFADA 480 SPLVISVLDG YNVCIFAYGQ TGTGKTFTME GTEQSRGVNY RTLEQLFEIA KERSETFTYN 540 ISVSVLEVYN EQIRDLLATS PTSKKLEIKQ SSEGSHHVPG IVEANVNSIR EAWNVLQTGS 600 SARAVGSNNV NEHSSRSHCM LCIMVRAKNL ISGECTKSKL WLVDLAGSER LTRTDVQGDR 660 LKEAQNINRS LSALGDVIYS LATKSNHIPY RNSKLTHLLQ DSLGGDSKTL MFVQISPSEQ 720 DLSETLSSLN FATRVRGVEL GPARKQIDTS ELQKMKVMLE KARQDSRSKD ESLRKLEENL 780 QNLENRAKYK DQTYKNQQEK IKELEGQVSL KSNLHDQSDK QASQLLERLK GREELCSTLQ 840 IKVKELENRL RDRQQSESAI FQQKVKDIEN KLKEQERESE SHSISLQHKV KELESKLKEQ 900 ERQHVESLML RQKIKELEDK LKEQEQQFQC RLSRDFADLI KYTPNEVKTS KGDDEVMSDI 960 DLRILRSSNS VNRPMSHGSI LPRGNGHQHE TRKKRDSRSG ETENNNILKS SSYENKKRKS 1020 DPPRVAATRV MRTAKPVTAT IQGPSVHKRI NRDQVQGIKE RDTKKKIWSR * 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd01369 | KISc_KHC_KIF5 | 6.0e-105 | 416 | 734 | 324 | + Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. | ||
cd00106 | KISc | 1.0e-121 | 416 | 736 | 329 | + Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. | ||
smart00129 | KISc | 1.0e-138 | 416 | 744 | 336 | + Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. | ||
pfam00225 | Kinesin | 1.0e-139 | 422 | 738 | 326 | + Kinesin motor domain. | ||
cd01366 | KISc_C_terminal | 0 | 414 | 741 | 330 | + Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. |
Gene Ontology | |
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GO Term | Description |
GO:0003777 | microtubule motor activity |
GO:0005524 | ATP binding |
GO:0007018 | microtubule-based movement |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63715.1 | 0 | 1 | 1054 | 1 | 1063 | hypothetical protein [Vitis vinifera] |
EMBL | CBI40845.1 | 0 | 93 | 1070 | 1 | 979 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266404.1 | 0 | 1 | 857 | 1 | 871 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266404.1 | 4e-34 | 808 | 1070 | 719 | 982 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002532381.1 | 0 | 1 | 1068 | 1 | 1073 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2h58_A | 0 | 413 | 740 | 2 | 330 | A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp |
PDB | 3h4s_A | 0 | 403 | 792 | 1 | 383 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3cob_C | 0 | 414 | 778 | 4 | 368 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3cob_A | 0 | 414 | 778 | 4 | 368 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
PDB | 3cnz_B | 0 | 414 | 778 | 4 | 368 | A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY750292 | 252 | 550 | 800 | 0 |
EL442930 | 266 | 502 | 765 | 0 |
EH194227 | 317 | 549 | 863 | 0 |
DV990845 | 301 | 471 | 767 | 0 |
FL921658 | 258 | 506 | 763 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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