| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10025074m |
| Family | PL4 |
| Protein Properties | Length: 671 Molecular Weight: 77256.3 Isoelectric Point: 8.869 |
| Chromosome | Chromosome/Scaffold: 7 Start: 4965341 End: 4971291 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 48 | 653 | 0 |
| KHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNV DKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDK DIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMV EVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDY KYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHV TRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQ SRSRSP | |||
| Full Sequence |
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| Protein Sequence Length: 671 Download |
| MEKVRWKRKG SLVAALLLMF FIGVSSEKIP VSNPRELKTS LGVQLNTKHR RLVVMDNGLV 60 QVTLSNPEGE VIGIKYNEID NVLETQNEED NRGYWDVVWY EPEKQGSYDK LIATDFKVIM 120 QDENQVEVSF TRTWNISLRG SLAPLNVDKR YIMRRGVSGF YFYAIMERKE GWPDVDMDQI 180 RTVFKLQQNK FHFMAISNDR QRIMPMPEDR ATGQPLAYPE AVLLTDPINP DLRGEVDDKY 240 QYSSEDKDIR VHGWISSDPP VGFWMITPSD EFRSGGPNKQ DLTSHVGPVV LSMFTSTHYA 300 GKEINTEFRN GEPWKKVFGP ALVYLNSVSS EEKPLNLWED AKRQMMVEVR KWPYNFPESV 360 DFPKRNQRGG VFGQLRVHDR YISNRLMWAD SAYVGLAAPG GVGSWERDSK GYQFWTKANK 420 RGYFSIKNVR QGDYNLYAWI PGIVGDYKYS ANITVRAGSN INLGVLVYEP PRKGPTLWEI 480 GIPDRSAAEF FVPDPYPTLA NQLYTNHPEK FRQYGLWERY VDLYRNDDLE YTVGDSYHAK 540 DWFFAHVTRD VGNRTYKPTT WRIIFELKHL NNNGHYTLQL ALASATDSDL HVRFNNPNAD 600 PPHFATGTIG KDNAIARHGI HGLYRLYSID VPSVLLNRGR NTIYLTQSRS RSPFQGVLYD 660 YIRLEGPPRT * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 1.0e-28 | 367 | 466 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 1.0e-43 | 478 | 665 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 1.0e-73 | 53 | 331 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-89 | 13 | 236 | 226 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_179847.1 | 0 | 25 | 670 | 34 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 1 | 667 | 1 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 53 | 670 | 1 | 620 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 11 | 667 | 13 | 667 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 52 | 670 | 1 | 621 | lyase, putative [Ricinus communis] |
