| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10025302m |
| Family | AA3 |
| Protein Properties | Length: 557 Molecular Weight: 61061.6 Isoelectric Point: 8.7213 |
| Chromosome | Chromosome/Scaffold: 7 Start: 15496821 End: 15499377 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 52 | 550 | 0 |
| SEDYYDYVVVGGGTAGCPLAATLSQSFKVLLLERGGTAYGKPNLMTQEGFLTALMETDTFDSPAQGFTSEDGVPNARGRVLGGSSAINAGFYSRADQDFY RRSGMNWDLKVVNESYEWVEEAVVFRPQLRNWQSAVRDGLLEAGVDPYNGFRVDHVVGTKIGGTTFDSSGRRHSAADLLSYANARNIRVAIYASVERVLL AASSPYPGSGQAAIGVVYRDRTGRYHHAMVREKGEVILCAGAIGSPQLLFLSGIGARPYLSSLGIPVAYHHPYVGQYMYDNPRNGISIVPPIPLEHSLIQ VVGITEIGAYVEAASTVIPFASLPRSVFIRTPSPPLYLTVATLMEKIIGPLSSGSLRLASTDVRVNPIVRFNYFSNPVDVERCINGTRKIGDVLRSRSMD DFRLHEWFGARNFRFVGPALPVDQSDHAQMAEFCRRTVSTIWHYHGGCVVGKVVDRDLRVIGIDALRIVDGSTFSISPGTNPQATLMMLGRYVGAKLIR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 557 Download |
| MAPKHPICFS LQYIAFLVLV CSVVSWARPH SQRQTQEPSY LKFVHNATDF PSEDYYDYVV 60 VGGGTAGCPL AATLSQSFKV LLLERGGTAY GKPNLMTQEG FLTALMETDT FDSPAQGFTS 120 EDGVPNARGR VLGGSSAINA GFYSRADQDF YRRSGMNWDL KVVNESYEWV EEAVVFRPQL 180 RNWQSAVRDG LLEAGVDPYN GFRVDHVVGT KIGGTTFDSS GRRHSAADLL SYANARNIRV 240 AIYASVERVL LAASSPYPGS GQAAIGVVYR DRTGRYHHAM VREKGEVILC AGAIGSPQLL 300 FLSGIGARPY LSSLGIPVAY HHPYVGQYMY DNPRNGISIV PPIPLEHSLI QVVGITEIGA 360 YVEAASTVIP FASLPRSVFI RTPSPPLYLT VATLMEKIIG PLSSGSLRLA STDVRVNPIV 420 RFNYFSNPVD VERCINGTRK IGDVLRSRSM DDFRLHEWFG ARNFRFVGPA LPVDQSDHAQ 480 MAEFCRRTVS TIWHYHGGCV VGKVVDRDLR VIGIDALRIV DGSTFSISPG TNPQATLMML 540 GRYVGAKLIR YRSING* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 4.0e-35 | 56 | 331 | 317 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 8.0e-38 | 57 | 541 | 530 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| TIGR01810 | betA | 1.0e-39 | 57 | 552 | 563 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 1.0e-46 | 56 | 542 | 548 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 16 | 552 | 589 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE65766.1 | 0 | 25 | 552 | 26 | 550 | mandelonitrile lyase [Arabidopsis thaliana] |
| GenBank | ACN31582.1 | 0 | 39 | 552 | 36 | 582 | unknown [Zea mays] |
| RefSeq | NP_177448.1 | 0 | 25 | 552 | 26 | 550 | (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002277531.1 | 0 | 6 | 552 | 4 | 546 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311915.1 | 0 | 37 | 552 | 1 | 517 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 39 | 553 | 10 | 518 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 3gdp_A | 0 | 39 | 553 | 10 | 518 | A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree |
| PDB | 3gdn_B | 0 | 39 | 553 | 10 | 518 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 39 | 553 | 10 | 518 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 39 | 553 | 10 | 518 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
