Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10026919m |
Family | GH28 |
Protein Properties | Length: 407 Molecular Weight: 43530 Isoelectric Point: 5.9793 |
Chromosome | Chromosome/Scaffold: 7 Start: 11193665 End: 11197537 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 395 | 0 |
TCSATAKSPTMVIPKGKTFLVHPITFTGPCKSSDITIMLSGSIIAPNGPNEWKEDDKSKWFDIQSVDSLQIDGSGTIDGRGKAWWDISCKINKKEGCVKL APTVLKFDRCNNLRMNNMNFINSPQTHVTVMGCIGVEFGFLSIQAPGTSPNTDGIHIQASSNVYIHNAHISNGDDCISIGDNTSNINITQVDCGPGHGVS IGSLGKDGGEVHVENITVSNINFKGTTNGARIKTWQVGKGTVKHIVFSNLNFTDVENPIIIDQHYCDVADSCKETDTGVHIDDALYAQSFGTSKTEVAIN LNCSSSSPCTNIIVDTIQLKPANPGQRVISSCNNANGQ |
Full Sequence |
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Protein Sequence Length: 407 Download |
CFNSKLSGLI SVFAFCMSSM CYASIRINAD EFNVLDFGAA GDGNADDSMA FIKAWNNTCS 60 ATAKSPTMVI PKGKTFLVHP ITFTGPCKSS DITIMLSGSI IAPNGPNEWK EDDKSKWFDI 120 QSVDSLQIDG SGTIDGRGKA WWDISCKINK KEGCVKLAPT VLKFDRCNNL RMNNMNFINS 180 PQTHVTVMGC IGVEFGFLSI QAPGTSPNTD GIHIQASSNV YIHNAHISNG DDCISIGDNT 240 SNINITQVDC GPGHGVSIGS LGKDGGEVHV ENITVSNINF KGTTNGARIK TWQVGKGTVK 300 HIVFSNLNFT DVENPIIIDQ HYCDVADSCK ETDTGVHIDD ALYAQSFGTS KTEVAINLNC 360 SSSSPCTNII VDTIQLKPAN PGQRVISSCN NANGQSKGND QPKCCF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-81 | 32 | 405 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-86 | 15 | 396 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 7.0e-89 | 33 | 404 | 374 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 8.0e-94 | 27 | 406 | 380 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-103 | 32 | 406 | 375 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 35 | 406 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
DDBJ | BAC57279.1 | 0 | 23 | 405 | 44 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 23 | 405 | 44 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | XP_002517618.1 | 0 | 24 | 380 | 3 | 351 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 159 | 396 | 470 | 707 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-27 | 128 | 322 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-17 | 134 | 322 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-17 | 134 | 322 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-17 | 134 | 322 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-17 | 134 | 322 | 80 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |