Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10027074m |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42492.7 Isoelectric Point: 6.4226 |
Chromosome | Chromosome/Scaffold: 7 Start: 11155501 End: 11158063 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 386 | 0 |
CGSKSNAPPLLVPAGKTFLLNPVSFQGPCKSSSINVQIQGNIVAPHSSAWDGHDKKKWLLFSNVNGLTVNGNGKIDGKGASWWSNKQHQRPTALSFGSCN NLVFRGLMHVDSPGNHISVYGCNDVSISNLKIIAPESSPNTDGIDITHSSNVQIRDCTIATGDDCVAIGTDTSNIAVTGVICGPGHGISIGSLGANGGTS IVEDVHVRDCTFKGTKNGARIKTWQGGSGHARRISFERIKLESSDNPIIIDQYYCGPNDECKNQTSAVKVSDVSYIGFQGTSSTEEAVQLSCSESVGCTD IKINDIDITHSDSGKDTRASCINAHGE |
Full Sequence |
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Protein Sequence Length: 401 Download |
MRELLIIILI LSMAIWGSSF QPREAFPSYA SSVSVIQFGA VGDGETDDSQ AFLKAWKSIC 60 GSKSNAPPLL VPAGKTFLLN PVSFQGPCKS SSINVQIQGN IVAPHSSAWD GHDKKKWLLF 120 SNVNGLTVNG NGKIDGKGAS WWSNKQHQRP TALSFGSCNN LVFRGLMHVD SPGNHISVYG 180 CNDVSISNLK IIAPESSPNT DGIDITHSSN VQIRDCTIAT GDDCVAIGTD TSNIAVTGVI 240 CGPGHGISIG SLGANGGTSI VEDVHVRDCT FKGTKNGARI KTWQGGSGHA RRISFERIKL 300 ESSDNPIIID QYYCGPNDEC KNQTSAVKVS DVSYIGFQGT SSTEEAVQLS CSESVGCTDI 360 KINDIDITHS DSGKDTRASC INAHGELYGR LVPSVDCLLP * |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 4.0e-94 | 31 | 393 | 373 | + polygalacturonase ADPG |
PLN02188 | PLN02188 | 1.0e-95 | 33 | 393 | 372 | + polygalacturonase/glycoside hydrolase family protein |
PLN02793 | PLN02793 | 2.0e-119 | 21 | 394 | 383 | + Probable polygalacturonase |
PLN03010 | PLN03010 | 2.0e-130 | 29 | 386 | 359 | + polygalacturonase |
PLN03003 | PLN03003 | 3.0e-134 | 28 | 398 | 375 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN62658.1 | 0 | 5 | 399 | 30 | 434 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 1 | 398 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 34 | 398 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 31 | 399 | 18 | 390 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002515526.1 | 0 | 1 | 398 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-20 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-20 | 134 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |