Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10027111m |
Family | PL4 |
Protein Properties | Length: 374 Molecular Weight: 42538.9 Isoelectric Point: 8.4162 |
Chromosome | Chromosome/Scaffold: 7 Start: 17782866 End: 17786735 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 21 | 219 | 0 |
QTLDYREPVLLTNPTNKDINCHVLVDYRYLYSSEHEDSRVHGWISQNLPVGFWMIAPSDEFRARGPIKQELTSNVGPTVLSKFSSTHYSGREIDTYYGKG EPWKKVLGPAFVYLNSVSSPENPRALWEDAKQQMLKEVESWPYDFSRSKDFPNPIKDEAKPLWAKSTFVGSVAPGDAGSWQRETRGYQFRTQTGENGHF |
Full Sequence |
---|
Protein Sequence Length: 374 Download |
MAVQDHKPKL MPLNGDRIKG QTLDYREPVL LTNPTNKDIN CHVLVDYRYL YSSEHEDSRV 60 HGWISQNLPV GFWMIAPSDE FRARGPIKQE LTSNVGPTVL SKFSSTHYSG REIDTYYGKG 120 EPWKKVLGPA FVYLNSVSSP ENPRALWEDA KQQMLKEVES WPYDFSRSKD FPNPIKDEAK 180 PLWAKSTFVG SVAPGDAGSW QRETRGYQFR TQTGENGHFM NLGTIVYEPP RNGPTLWGIG 240 VPHRLAAEFF VPDPYAKFKN PLFTGSSDKY RQDGLRERYA DFYSNDDLKY TIGVSNYTQD 300 WFFAHVTIKR RRLFSTGTIG RDNAIARHGF MGCTDFTASI CQAICFTEEK NNICISQSRS 360 NGPFQGVMLL YSL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 0.002 | 1 | 39 | 41 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 0.0004 | 180 | 219 | 40 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-10 | 237 | 368 | 176 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-25 | 15 | 140 | 126 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002264484.1 | 0 | 1 | 371 | 122 | 588 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 1 | 371 | 198 | 665 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 371 | 142 | 611 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 371 | 195 | 661 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 371 | 143 | 612 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GW864372 | 301 | 1 | 249 | 0 |
EL398250 | 229 | 1 | 219 | 0 |
DY969340 | 285 | 73 | 307 | 0 |
EL385368 | 249 | 58 | 260 | 0 |
GT008155 | 268 | 79 | 296 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|