y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10027115m |
Family | AA7 |
Protein Properties | Length: 515 Molecular Weight: 57812 Isoelectric Point: 7.9141 |
Chromosome | Chromosome/Scaffold: 7 Start: 9552056 End: 9553600 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 51 | 507 | 0 |
TPKPLAIVTPNHESHVQATIKCSNQAGLELRIRSGGHDYEGLSYTSTVPFVVLDMFNLRKIDINIADETAWVQAGATIGELYYQISNVSKLHAFPAGVCP TMGAGGHITGGGYGNLMRKYGLSSDNVVDAQLVDVEGRILNRESMGEDLFWAIRGGGGESFGVILAWKIKLVSVPENVTVFNVGKTTDQATSQGATDVIY KWQQVAPKLPEELFIRAMPKVVNGSRPLEKTVMVSFIGMFLGQISSLIPLMNQQFPELGLRAEDCHEMSWVESTLFWDQYRIGTSIKVLLNRSTDVKFSS KNKSDYVKNVIPKKALEEIWTKMINFGNMWMQWNPYGGRMSEISESETAFPHRAGNLFKIQYCALWEEEGINSTNLYTSKIRDFYASMAPYVSNSPREAF LNYRDLDIGNSYPSHKTSLLRDADVYGAKYFKGNYKRLVEVKTKVDPFNFFKNEQSI |
Full Sequence |
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Protein Sequence Length: 515 Download |
SNLELFLKCL LHDHIEPSNP ISELIYTRNN SSFQSVLNAY IKNRRFLTAS TPKPLAIVTP 60 NHESHVQATI KCSNQAGLEL RIRSGGHDYE GLSYTSTVPF VVLDMFNLRK IDINIADETA 120 WVQAGATIGE LYYQISNVSK LHAFPAGVCP TMGAGGHITG GGYGNLMRKY GLSSDNVVDA 180 QLVDVEGRIL NRESMGEDLF WAIRGGGGES FGVILAWKIK LVSVPENVTV FNVGKTTDQA 240 TSQGATDVIY KWQQVAPKLP EELFIRAMPK VVNGSRPLEK TVMVSFIGMF LGQISSLIPL 300 MNQQFPELGL RAEDCHEMSW VESTLFWDQY RIGTSIKVLL NRSTDVKFSS KNKSDYVKNV 360 IPKKALEEIW TKMINFGNMW MQWNPYGGRM SEISESETAF PHRAGNLFKI QYCALWEEEG 420 INSTNLYTSK IRDFYASMAP YVSNSPREAF LNYRDLDIGN SYPSHKTSLL RDADVYGAKY 480 FKGNYKRLVE VKTKVDPFNF FKNEQSIPPG LVNF* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR00387 | glcD | 0.003 | 57 | 249 | 207 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
PLN02805 | PLN02805 | 0.001 | 54 | 288 | 247 | + D-lactate dehydrogenase [cytochrome] | ||
pfam08031 | BBE | 5.0e-16 | 449 | 508 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 1.0e-18 | 34 | 245 | 223 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 3.0e-22 | 54 | 191 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299007.1 | 0 | 4 | 509 | 25 | 523 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002299010.1 | 0 | 1 | 511 | 16 | 518 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002300550.1 | 0 | 6 | 514 | 1 | 497 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317074.1 | 0 | 2 | 509 | 14 | 514 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529891.1 | 0 | 3 | 509 | 18 | 518 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 4 | 509 | 5 | 512 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 6 | 511 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 6 | 511 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 4 | 509 | 9 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 4 | 509 | 9 | 495 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777438 | 515 | 4 | 508 | 0 |
JK988562 | 309 | 17 | 325 | 0 |
DY290183 | 370 | 86 | 453 | 0 |
DY262774 | 397 | 121 | 512 | 0 |
GR929724 | 325 | 78 | 402 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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