Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10027137m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41776.7 Isoelectric Point: 5.5017 |
Chromosome | Chromosome/Scaffold: 7 Start: 11170746 End: 11173835 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 379 | 0 |
GDTSNNPTLQVPQGKTFLLQPTSFQGPCKSSNLQVQIEGNLIAPEGPSSWKGKDRRSWLYFANVNGFTVNGNGEIDGQGSQWWKLCSDALVFEKCTSFQV SGLKHINSQKNHISLDNCQDATLSNLHISAPESSPNTDGIDISASQNIHILNSNIATGDDCIAINTGSSQINVTGLTCGPGHGISIGSLGKQGEAAAVEE VHVKNCTLNATQNGLRIKTWQGGSGYARKITFNDITLTDVDNPIIIDQFYCPHEQCSNETNAVKISDVSYTGIHGTSITQDAIALNCSRTVGCDNIVLEH IHIASSNSKEGTYSTCINAHGKC |
Full Sequence |
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Protein Sequence Length: 391 Download |
MQELFFIISL LMCMATLGWS RSYPGTMPYN VMNFGAVGNG VTDDSQAFIK AWNAVCGDTS 60 NNPTLQVPQG KTFLLQPTSF QGPCKSSNLQ VQIEGNLIAP EGPSSWKGKD RRSWLYFANV 120 NGFTVNGNGE IDGQGSQWWK LCSDALVFEK CTSFQVSGLK HINSQKNHIS LDNCQDATLS 180 NLHISAPESS PNTDGIDISA SQNIHILNSN IATGDDCIAI NTGSSQINVT GLTCGPGHGI 240 SIGSLGKQGE AAAVEEVHVK NCTLNATQNG LRIKTWQGGS GYARKITFND ITLTDVDNPI 300 IIDQFYCPHE QCSNETNAVK ISDVSYTGIH GTSITQDAIA LNCSRTVGCD NIVLEHIHIA 360 SSNSKEGTYS TCINAHGKCD DSVPSVGCLK * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-96 | 56 | 379 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-98 | 5 | 378 | 390 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-117 | 31 | 389 | 372 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-119 | 30 | 390 | 369 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 5.0e-127 | 29 | 390 | 363 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36306.1 | 0 | 1 | 389 | 94 | 493 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.0000000003 | 317 | 386 | 22 | 90 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36307.1 | 0 | 1 | 390 | 1 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 14 | 390 | 1 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 26 | 389 | 15 | 372 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-26 | 125 | 361 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-22 | 64 | 332 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-22 | 64 | 332 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-22 | 64 | 332 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-22 | 64 | 332 | 25 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |