Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10027366m |
Family | GH28 |
Protein Properties | Length: 416 Molecular Weight: 44845.3 Isoelectric Point: 6.548 |
Chromosome | Chromosome/Scaffold: 7 Start: 11146436 End: 11151635 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 397 | 0 |
DACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIERWIVFGNITGLNINGRGHFDGNGQKWWDQSCKHHPGKAVSFI QCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAGDDCISISDQTSNISVTYVNCGPGHGISIGSLGKNG EEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVA CTDIKLENIELQSATEGKGVLSSCKNA |
Full Sequence |
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Protein Sequence Length: 416 Download |
MTWYSELAVF GNCQTGVDLV ASICILILLS TLATHINVNA DDQNTFNVLN YGAVGNGNSD 60 DSLAYAKAWN DACKANAQTP TMIIPKGKTF LVHPITFSGP CKSSNISIQL SGTIKAPDGP 120 SAWTSEIERW IVFGNITGLN INGRGHFDGN GQKWWDQSCK HHPGKAVSFI QCNNVHINEI 180 YVERSPQVHI VVDYSQDVHF KSLIIDSPET SPNTDGIHIA RSHDVSVHTS IIAAGDDCIS 240 ISDQTSNISV TYVNCGPGHG ISIGSLGKNG EEVKVENITV RHVNFCKTTN GARIKTWQAG 300 KGQVQHVEFS YMNFTEVQNP IIIDQYYCDQ KDVCAKTSTG VHISDVRYLN ATGTSATDVA 360 INLDCSNNVA CTDIKLENIE LQSATEGKGV LSSCKNAFGV AKGNCKPKSC LKSNS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-88 | 45 | 408 | 373 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-90 | 19 | 410 | 404 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-91 | 44 | 401 | 362 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-98 | 46 | 415 | 371 | + polygalacturonase | ||
PLN02793 | PLN02793 | 5.0e-104 | 46 | 414 | 377 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 49 | 411 | 1 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
RefSeq | NP_178131.1 | 0 | 84 | 411 | 6 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266960.1 | 0 | 41 | 411 | 15 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002517618.1 | 0 | 43 | 385 | 8 | 351 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002517618.1 | 0 | 47 | 414 | 413 | 720 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-21 | 141 | 383 | 113 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-19 | 147 | 384 | 80 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-19 | 147 | 384 | 80 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-19 | 147 | 384 | 80 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-19 | 147 | 384 | 80 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO844129 | 336 | 53 | 371 | 0 |
DT769246 | 252 | 166 | 407 | 0 |
DT746124 | 246 | 172 | 407 | 0 |
DT768232 | 233 | 185 | 407 | 0 |
DV135481 | 289 | 55 | 328 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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