y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10027523m |
Family | GH28 |
Protein Properties | Length: 428 Molecular Weight: 46244.6 Isoelectric Point: 8.1762 |
Chromosome | Chromosome/Scaffold: 7 Start: 11093533 End: 11097571 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 393 | 0 |
KKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTIDGMGQEWWSRSCKINTTNPCRHA PTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISI GSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQTSAVKVENITFIHIKGTSATEEAIKF ACSDDSPCEGLFLEDVQLVSHSGGIAKSFCWEA |
Full Sequence |
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Protein Sequence Length: 428 Download |
MKQLKFSSLV STEGFDSLLE LPHSGSNGTR SKSKRVIFVG DFGAKGDGFN DDTEAFANAW 60 KKACSFPART KIVFSAGYTF LIHPIDISGP CKSRLTLEIS GTIVAPKDPD VWKGLNRRRW 120 LYFNRVNHLT VQGGGTIDGM GQEWWSRSCK INTTNPCRHA PTAITFHKCK NLKVQNLRVV 180 NSQQMHIAFT NCLRVVISNL EVIAPAESPN TDGIHISASR GVEVKNSIVG TGDDCISIVG 240 NSSLIRIRNF ACGPGHGISI GSLGKSNSSV RIHDIMVYGA LISNTQNGVR IKTWQGGSGS 300 ATNIQFLDVL MKNVSNPIII DQYYCDSPVP CANQTSAVKV ENITFIHIKG TSATEEAIKF 360 ACSDDSPCEG LFLEDVQLVS HSGGIAKSFC WEAYGSSVGQ VEPPPCFACS EGLIEQKAPS 420 NLAFQSF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-95 | 31 | 407 | 379 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-97 | 15 | 406 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-104 | 64 | 390 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-124 | 32 | 403 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 9 | 427 | 419 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 12 | 416 | 32 | 438 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 1 | 427 | 1 | 445 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 15 | 422 | 31 | 439 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 1 | 422 | 16 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 6 | 420 | 2 | 418 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 131 | 324 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 3e-21 | 128 | 371 | 70 | 324 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 6e-18 | 112 | 390 | 58 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 112 | 390 | 58 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-18 | 112 | 390 | 58 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY660853 | 297 | 1 | 279 | 0 |
EY660204 | 259 | 1 | 241 | 0 |
EY661495 | 241 | 1 | 223 | 0 |
EY861579 | 198 | 31 | 228 | 0 |
EY660204 | 21 | 246 | 266 | 1.1 |
Sequence Alignments (This image is cropped. Click for full image.) |
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