Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10027526m |
Family | AA7 |
Protein Properties | Length: 534 Molecular Weight: 59854.9 Isoelectric Point: 9.3817 |
Chromosome | Chromosome/Scaffold: 7 Start: 18584130 End: 18585731 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 74 | 526 | 0 |
KPQVIIKPFHVSQIQTVLKCSQKHGLQIRVRSGGHDSEGLSYTSEVPFVMIDLINLSSINVDEEKKTAWVQAGATLGQLYYRIAKKSKILGFPAGVCPTV GVGGHFSGGGYGYVMRKFGLSADQVVDAHLIDVRGRILDRKSMGEDLFWAIRGGGAASFGIIVAWKVNLVTVPSTVTAFRVTRTLENNATKILDKYQYVA DKLPVDLVISATFRAVSLSNTKKKGTIMCSFSSLFLGGVDRLLPLMQERFPELGLTKEDCKEMSWIESAIYLSGLQASKPYKLEALLDRNYSKSFFKEKS DYVREPIPVKGFEGMYDLLYEKGGHNIQVVIFPYGGKMSEISESAIPFPHRAGNIYYLLYFAVWEKEEESQNALKLVTKMYNYMTPYASKNPRAAYLNDK DLEIGRNNKGDTHTSIKKASIWGNKYFMNNFNKLVDVKTMVDPDNFFRNEQSI |
Full Sequence |
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Protein Sequence Length: 534 Download |
MKSTTIILSI TLAVLLSFHG IVLLTNENFL QCLSVHSEDT SISEVIYTQD NPLYSSILDF 60 SKQNLLFRVP KYPKPQVIIK PFHVSQIQTV LKCSQKHGLQ IRVRSGGHDS EGLSYTSEVP 120 FVMIDLINLS SINVDEEKKT AWVQAGATLG QLYYRIAKKS KILGFPAGVC PTVGVGGHFS 180 GGGYGYVMRK FGLSADQVVD AHLIDVRGRI LDRKSMGEDL FWAIRGGGAA SFGIIVAWKV 240 NLVTVPSTVT AFRVTRTLEN NATKILDKYQ YVADKLPVDL VISATFRAVS LSNTKKKGTI 300 MCSFSSLFLG GVDRLLPLMQ ERFPELGLTK EDCKEMSWIE SAIYLSGLQA SKPYKLEALL 360 DRNYSKSFFK EKSDYVREPI PVKGFEGMYD LLYEKGGHNI QVVIFPYGGK MSEISESAIP 420 FPHRAGNIYY LLYFAVWEKE EESQNALKLV TKMYNYMTPY ASKNPRAAYL NDKDLEIGRN 480 NKGDTHTSIK KASIWGNKYF MNNFNKLVDV KTMVDPDNFF RNEQSIPSRS SSY* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0812 | MurB | 0.005 | 67 | 165 | 103 | + UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] | ||
TIGR01678 | FAD_lactone_ox | 0.003 | 74 | 152 | 83 | + sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1. | ||
pfam08031 | BBE | 5.0e-13 | 468 | 527 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 4.0e-17 | 75 | 528 | 476 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 1.0e-22 | 75 | 212 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002299045.1 | 0 | 7 | 531 | 8 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330609.1 | 0 | 25 | 531 | 27 | 533 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330610.1 | 0 | 26 | 531 | 28 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 25 | 531 | 20 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333020.1 | 0 | 26 | 531 | 28 | 532 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 27 | 527 | 5 | 511 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 26 | 527 | 10 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 26 | 527 | 10 | 494 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 27 | 533 | 9 | 500 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 27 | 533 | 9 | 500 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |