| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10030037m |
| Family | GH18 |
| Protein Properties | Length: 630 Molecular Weight: 70630.5 Isoelectric Point: 7.9895 |
| Chromosome | Chromosome/Scaffold: 8 Start: 20679212 End: 20682258 |
| Description | S-locus lectin protein kinase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH18 | 8 | 263 | 3.6e-39 |
| YSSMVSNSSHRKSFIDCSIRIARLYGFQGLDFAWTAPNTSTDLFNIGLLFDEWRIAATKLEAKNSSRQQSQLILTARFHYSPPANSYLLNSRQRNLNWVH AVTASYYEPVSTNFTAPPAALYGSSSGGFARSTDQVLKAWIERGLPADKLVMCLPFYGYAWRLVKPEDNGIGAAAAGPALHDSGLVTYKEINNHIKTYGP DVQVMYNSTYEVNYCSIEKIWFGFDDVEAVRMKVAYAKEKKLRGYFVWRVDYDDHN | |||
| Full Sequence |
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| Protein Sequence Length: 630 Download |
| MDTNYSIYSS MVSNSSHRKS FIDCSIRIAR LYGFQGLDFA WTAPNTSTDL FNIGLLFDEW 60 RIAATKLEAK NSSRQQSQLI LTARFHYSPP ANSYLLNSRQ RNLNWVHAVT ASYYEPVSTN 120 FTAPPAALYG SSSGGFARST DQVLKAWIER GLPADKLVMC LPFYGYAWRL VKPEDNGIGA 180 AAAGPALHDS GLVTYKEINN HIKTYGPDVQ VMYNSTYEVN YCSIEKIWFG FDDVEAVRMK 240 VAYAKEKKLR GYFVWRVDYD DHNWVLSQAA GCCAYKYNQM KRLNLREGTE DSAKASNTTA 300 NNETEAGDFN RNVPNLRVYS LADIEAATEG FSIRNKLGEG GYGPVYKGVL PCGEVIAVKK 360 LSKSSAQGFE EFKNEVMLTA KLQHVNLIRV LGFCIDNPIR RLILDWKKRV HIIEGITQGL 420 LYLQEYSRLT IIHRDLKASN ILLGEDMKPK ISDFGLARIF AKESLKANTE QVVGTIGYIP 480 PEYARQGVYS TKSDVFSFGV LLLQIISGKR LSMLCGINEN LSILEHAYEL WKGGKGMEFV 540 DSFLDDRNSS CKLMRCLEIA LLCVQENPND RPSMLEVSSM LKNETTNTNT PKKPAFSKQV 600 DEIGIELLST TNLEKCSAYD VSFSEVVAR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00069 | Pkinase | 5.0e-41 | 336 | 577 | 265 | + Protein kinase domain. | ||
| smart00220 | S_TKc | 6.0e-42 | 331 | 577 | 269 | + Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily. | ||
| pfam00704 | Glyco_hydro_18 | 1.0e-42 | 17 | 260 | 246 | + Glycosyl hydrolases family 18. | ||
| smart00636 | Glyco_18 | 6.0e-45 | 17 | 260 | 255 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 2.0e-63 | 18 | 266 | 255 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI35714.1 | 0 | 8 | 629 | 498 | 1130 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263709.1 | 0 | 4 | 629 | 111 | 764 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002263792.1 | 0 | 8 | 629 | 103 | 753 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002270006.1 | 0 | 4 | 629 | 111 | 765 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324558.1 | 0 | 4 | 629 | 102 | 763 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3aqu_D | 0 | 6 | 270 | 81 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 6 | 270 | 81 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_B | 0 | 6 | 270 | 81 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_A | 0 | 6 | 270 | 81 | 339 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3ulz_A | 0 | 312 | 584 | 13 | 309 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY301132 | 255 | 17 | 271 | 0 |
| FC877995 | 245 | 17 | 261 | 0 |
| GO916691 | 253 | 353 | 584 | 0 |
| EY712595 | 288 | 148 | 397 | 0 |
| GH167909 | 262 | 267 | 506 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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