| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10030238m |
| Family | GH18 |
| Protein Properties | Length: 726 Molecular Weight: 81403 Isoelectric Point: 7.7146 |
| Chromosome | Chromosome/Scaffold: 8 Start: 20636380 End: 20639630 |
| Description | lectin protein kinase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH18 | 26 | 355 | 1.4013e-45 |
| NLSEVSTISGINYDLFTHLICSSADINSTTYQLSLSLPSDENQIAKFADTVKKKNPSITILLSIGQGMDTNYSIYSSMVRNSSHRESFIDSSIRMARLYG FQGLDFAWTAPNTSTDMFNIGLLFDEWRIAATKLEAKNSSRQQSPLILTARFRYSPPANSYLLNSMQRNLNWVHAVTANYYKPLSTNFTAPPAALHGSSS GGFAKSTDQVLKAWIQRGLSADKLVMSLPFYGYAWTLVKPEDNGIGAAATGPALHDNGVVTYKEIKNRIKTYGPNVQVMYNSTYVVNYCSIGKIWFGFDD VEAVRAKIAYTKEKRLLGYYVWRVDYDDHN | |||
| Full Sequence |
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| Protein Sequence Length: 726 Download |
| IIFHALLYSE LHPAKAKPWI RVGYLNLSEV STISGINYDL FTHLICSSAD INSTTYQLSL 60 SLPSDENQIA KFADTVKKKN PSITILLSIG QGMDTNYSIY SSMVRNSSHR ESFIDSSIRM 120 ARLYGFQGLD FAWTAPNTST DMFNIGLLFD EWRIAATKLE AKNSSRQQSP LILTARFRYS 180 PPANSYLLNS MQRNLNWVHA VTANYYKPLS TNFTAPPAAL HGSSSGGFAK STDQVLKAWI 240 QRGLSADKLV MSLPFYGYAW TLVKPEDNGI GAAATGPALH DNGVVTYKEI KNRIKTYGPN 300 VQVMYNSTYV VNYCSIGKIW FGFDDVEAVR AKIAYTKEKR LLGYYVWRVD YDDHNWVLSQ 360 AAGTEDSPKA SNTRANDEAE AGDFNRNVPN LRVYSLADIE AATERFSVRN KLGEGGYGPV 420 YKGVLPCGEV IAVKKLSKTS TQGFEEFKNE VMLTAKLQHV NLIRVLGFCI DNEERMLIYE 480 YMPNKSLDCY LFDPIRRFIL DWKKRAHIIE GITQGLLYLQ EYSRLTIIHR DLKASNVLLS 540 EDMKPKISDF GMARIFAKES LEANTEQVVG TIGYIPPEYA TKGVYSTKSD VFSFGVLLLQ 600 IISGKRLSML CGINENLSIL EHAYELWKGG KGVEFVDSFL DDRNSPCKLM RCLEIALLCV 660 QENPNDRPSM LEVSSMLKNE TTNINTPKKP AFSKQVDEIG IELLSTTNLE KCSAYDVSFS 720 EVVAR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart00219 | TyrKc | 3.0e-48 | 411 | 677 | 282 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
| smart00221 | STYKc | 2.0e-48 | 411 | 677 | 282 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
| pfam00704 | Glyco_hydro_18 | 2.0e-58 | 32 | 352 | 326 | + Glycosyl hydrolases family 18. | ||
| smart00636 | Glyco_18 | 1.0e-61 | 32 | 352 | 332 | + Glyco_18 domain. | ||
| cd02879 | GH18_plant_chitinase_class_V | 7.0e-92 | 18 | 358 | 348 | + The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004672 | protein kinase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0006468 | protein phosphorylation |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI35714.1 | 0 | 1 | 725 | 407 | 1130 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263709.1 | 0 | 14 | 725 | 20 | 764 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002263792.1 | 0 | 1 | 725 | 12 | 753 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002270006.1 | 0 | 14 | 725 | 20 | 765 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324558.1 | 0 | 1 | 725 | 9 | 763 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3aqu_D | 0 | 33 | 374 | 18 | 351 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_C | 0 | 33 | 374 | 18 | 351 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_B | 0 | 33 | 374 | 18 | 351 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3aqu_A | 0 | 33 | 374 | 18 | 351 | A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis Thaliana |
| PDB | 3alg_A | 0 | 20 | 362 | 4 | 341 | A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From Nicotiana Tobaccum In Complex With Nag4 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY301132 | 290 | 77 | 366 | 0 |
| FC877995 | 277 | 77 | 353 | 0 |
| GO916691 | 263 | 428 | 690 | 0 |
| EY672454 | 249 | 354 | 599 | 0 |
| GH167909 | 235 | 369 | 602 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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