Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10030577m |
Family | GH28 |
Protein Properties | Length: 1074 Molecular Weight: 117544 Isoelectric Point: 5.714 |
Chromosome | Chromosome/Scaffold: 4 Start: 22564848 End: 22570721 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 732 | 1037 | 0 |
NTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSNPCRGAP TALTIDSSSAVKVKGLTIQNSQQMNFVISRSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISLA TLGETLGKGGSGYVRGVRFENVRMEDVSNPIIIDQFYCDSPKACQNQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVET YCNSAQ |
Full Sequence |
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Protein Sequence Length: 1074 Download |
MLSTKLLPRV RTITTLAPTC TSIVPLSSSL LLDSYCQPNP QLNIYSSNRT IDDFVKSGHL 60 NSAKKLFDEM PARDVVTYNL LISGYGKFGH PKQALYLYDE MVSHGIKESA STFSSVLSVC 120 SNAGFYTEGI QIHCRVLSLG FGLNLYIGSP LVDLYMRMGP SVRALDLFDE LPERNLATWN 180 LMLRAFCELS RPDEVLRMYN KMKAEGVEPN GLSFCYMVRG CSIGMLLDEG KQLHSHVIKL 240 GWVDVNIFVA NALVDFYSAC GSLIDAKKSF DFIPVDDVIS WNSIVSIYAD YDLIFDALEL 300 FFRMQLCRKR PSIRSFVEFL NFASRTGNVY FGKQIHGYVT KLGFDHGSVH VQSALTDMYG 360 KCNVIESSVA VFESVPGRSL ECCNSLMTSL LHSGNIEDAV EMFGFMVDEG IGLDEVTLST 420 TLKALSVSAS ANVGSCRLLH CCAIKSGFES NIAVSCSLMD AYSRCGHIEL SHQVFKKIPS 480 PNVVCFTSIM NGYSRNGMGR EALDMLEVMI QRGLIPDKVT FLCVLAGCNH SGMVKEGQLV 540 FNSMKSVYGI DADRQHYSCM IDMLGRAGIL DKAEELLQQT PGGGDCVMWS SLLRSCRVHG 600 NEIIGRRVAN ILMELEPVDF AVYSQVSNFY SEIGEFEVSM QIRETALARK LTRDIGHSLI 660 EVNIAGKMVH DNIALLGELE NLDVEEENEV ELFEEPSWTS ERGGKVLVNV DSFGAAGDGV 720 SDDTQAFLNA WNTACSTPKS VFLVPAGRHY LVSATRFKGP CADKLVIQID GTIVAPAEPD 780 NWDPKLARIW LDFSKLNGVL FQGSGVIDGS GSKWWASSCK KNKSNPCRGA PTALTIDSSS 840 AVKVKGLTIQ NSQQMNFVIS RSESVRVYQV LVSAPEDSPN TDGIHITEST NVVLQDCKIG 900 TGDDCISIVN GSSAIKMKRI FCGPGHGISL ATLGETLGKG GSGYVRGVRF ENVRMEDVSN 960 PIIIDQFYCD SPKACQNQTS AVKISQIMYR NISGTTKSSK AMKFACSDTV PCSDIVLSNV 1020 NLEKKDGTVE TYCNSAQGIG YGIVHPSVDC LTSNDKDAKL AEPTRNEIVH TEL* 1080 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03077 | PLN03077 | 2.0e-41 | 180 | 599 | 428 | + Protein ECB2; Provisional | ||
PLN03077 | PLN03077 | 1.0e-65 | 89 | 601 | 514 | + Protein ECB2; Provisional | ||
PLN03077 | PLN03077 | 1.0e-91 | 40 | 670 | 636 | + Protein ECB2; Provisional | ||
PLN02218 | PLN02218 | 3.0e-98 | 708 | 1046 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-117 | 696 | 1054 | 387 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF79584.1 | 0 | 1 | 1071 | 1 | 1156 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
EMBL | CAN65318.1 | 0 | 30 | 1073 | 31 | 1052 | hypothetical protein [Vitis vinifera] |
EMBL | CBI28554.1 | 0 | 30 | 1073 | 31 | 1111 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_173759.2 | 0 | 1 | 663 | 1 | 665 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002328586.1 | 0 | 7 | 663 | 12 | 678 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000001 | 803 | 968 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.000000000001 | 700 | 1041 | 13 | 358 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000002 | 782 | 1022 | 58 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000002 | 782 | 1022 | 58 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000002 | 782 | 1022 | 58 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FE686036 | 240 | 696 | 935 | 0 |
EY741851 | 195 | 309 | 503 | 0 |
EY718419 | 214 | 666 | 879 | 0 |
EY741851 | 186 | 107 | 289 | 0.00000001 |
EY741851 | 160 | 230 | 386 | 0.000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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