Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10030777m |
Family | GH85 |
Protein Properties | Length: 756 Molecular Weight: 85057.7 Isoelectric Point: 5.5744 |
Chromosome | Chromosome/Scaffold: 4 Start: 1574473 End: 1580555 |
Description | Glycosyl hydrolase family 85 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH85 | 143 | 423 | 0 |
MQGGYVDDKWVQGGTNADAYAIWHWHLMDVFVYFSHSLVTLPPPCWTNTAHRHGVKVLGTFITEGDEGKVIATELLSTKESAHTYAERLAELAVALGFEG WLLNMEVKLDVDQIPNLKEFVSHLTQTMHSSVPGSLVIWYDSVTIDGKLEWQDQLNEKNKPFFDICDGIFVDYKWEEDYPKLSAAVAGDRKFDVYMGIDV FGRNTFGGGQWHTNVALDVIKKDDVSAAIFAPGWIYETKQSPDFQTAQNHWWSLVEKSWGILQNYPKVLPFYSNFDQGHGL |
Full Sequence |
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Protein Sequence Length: 756 Download |
MFQTHCQDLT FVFVFVFVFV VVPCILIIRI LHHLLRTYIN RKTLKTLRNS LLSLKKTLHS 60 LVLFITMSNS NDDSSAVDPP PFDPLQPSIP ISYPIKTLQD LHSRAYFDSF HYPFNKSTVP 120 LHPLNGASPT LPARPRILVC HDMQGGYVDD KWVQGGTNAD AYAIWHWHLM DVFVYFSHSL 180 VTLPPPCWTN TAHRHGVKVL GTFITEGDEG KVIATELLST KESAHTYAER LAELAVALGF 240 EGWLLNMEVK LDVDQIPNLK EFVSHLTQTM HSSVPGSLVI WYDSVTIDGK LEWQDQLNEK 300 NKPFFDICDG IFVDYKWEED YPKLSAAVAG DRKFDVYMGI DVFGRNTFGG GQWHTNVALD 360 VIKKDDVSAA IFAPGWIYET KQSPDFQTAQ NHWWSLVEKS WGILQNYPKV LPFYSNFDQG 420 HGLHISLEGE QMLDSPWNNI SSQGFQPMLE FKDDPNPDTI QVLVDFKEAS YSGGGNVTFK 480 GTLEENASFI ARLFQAELLL GNFPVYITYS VKSEETSLLG LLLEFSSARK ERKSVLLASR 540 RIDQSSTKFS ELIVPRQVKM LETTTEWATW EARIIMDGYA ITGISAVCYM PEPSRRTLES 600 TSNVQDNASV HTPAEYFAIL GDISIKTSGQ NSDFPLSSSW LVEAQYVKFA SDSQGTKTLS 660 AKIIWKLKDG NDSVFPQYNI YLGKPAKQAV GSLDGRVEST QEYLGVARVE SFYISNLIIP 720 SNTDTLKFII QVCSVEGTSQ NLDKSPFLLL DVKDK* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd00598 | GH18_chitinase-like | 0.0007 | 146 | 298 | 173 | + The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model. |
COG4724 | COG4724 | 4.0e-38 | 114 | 500 | 427 | + Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism] |
pfam03644 | Glyco_hydro_85 | 3.0e-120 | 143 | 422 | 299 | + Glycosyl hydrolase family 85. Family of endo-beta-N-acetylglucosaminidases. These enzymes work on a broad spectrum of substrates. |
cd06547 | GH85_ENGase | 4.0e-135 | 138 | 447 | 330 | + Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment model. |
Gene Ontology | |
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GO Term | Description |
GO:0005737 | cytoplasm |
GO:0033925 | mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002273683.1 | 0 | 67 | 755 | 1 | 690 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315137.1 | 0 | 88 | 753 | 26 | 697 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315138.1 | 0 | 71 | 755 | 9 | 696 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520781.1 | 0 | 67 | 753 | 1 | 691 | endo beta n-acetylglucosaminidase, putative [Ricinus communis] |
RefSeq | XP_002520784.1 | 0 | 67 | 755 | 1 | 687 | endo beta n-acetylglucosaminidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3fha_D | 2e-25 | 113 | 521 | 28 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fha_C | 2e-25 | 113 | 521 | 28 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fha_B | 2e-25 | 113 | 521 | 28 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fha_A | 2e-25 | 113 | 521 | 28 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |
PDB | 3fhq_F | 2e-25 | 113 | 521 | 28 | 460 | A Chain A, Structure Of Endo-Beta-N-Acetylglucosaminidase A |