Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10031195m |
Family | AA5 |
Protein Properties | Length: 536 Molecular Weight: 59286.6 Isoelectric Point: 6.0154 |
Chromosome | Chromosome/Scaffold: 4 Start: 23535723 End: 23537330 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 4 | 533 | 0 |
KSGGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGG YNVGDRVIRLFTPCNNEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFI FANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAVLPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVW SMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAVGPNLNPVLYSPDEEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYP YPTDLSLEAFHPHYLDPENAYMRPSILSLESIGRTVSYNEVFSVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGP PTATVAPPGYYMMFVVHAGIPSHAVWVKVT |
Full Sequence |
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Protein Sequence Length: 536 Download |
MPSKSGGQWV LLQSSIGISA MHMQVLNNDK VIIFDRTDMG PSNLSLPIDK CRKEGDVGQL 60 DCTAHSVLYD IASNTFRPLL LQTDTWCSSG AVLSDGTLVQ TGGYNVGDRV IRLFTPCNNE 120 GCDWVELSKN LWDRRWYASN QILPDNRIIV VGGRRVFTYE FYPKIDSLSS SLYLRFLIET 180 RDPGEENNLY PFLHLLPDGN LFIFANRRSI LFDYINNKLV KEFPVIPGND KRNYPSTGSS 240 ILLPVKLSAG SDGNGTAVLP DAEVMVCGGA PAGAFIKSDK ESVYVEASRT CGRLKVTDKY 300 PVWSMEFMPM PRVMSDMLLL PSGDVIIING ASNGTAGWED AVGPNLNPVL YSPDEEEPDR 360 RFVVLNPSKI PRMYHSSAVV LPDGRILVGG SNPHRRYNFT AYPYPTDLSL EAFHPHYLDP 420 ENAYMRPSIL SLESIGRTVS YNEVFSVTFE LSSYSPSGEI SVSLMTPSFT THSFAMNQRL 480 VVLNVVSVSQ LSVYAYKVVV NGPPTATVAP PGYYMMFVVH AGIPSHAVWV KVTWN* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 1.0e-24 | 426 | 532 | 108 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 8.0e-28 | 426 | 532 | 108 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 4.0e-122 | 21 | 269 | 252 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF43943.1 | 0 | 5 | 532 | 39 | 564 | AC012188_20 Weak similarity to glyoxal oxidase (glx2) from Phanerochaete chrysosporium gb |
RefSeq | NP_172895.1 | 0 | 5 | 529 | 39 | 561 | glyoxal oxidase-related [Arabidopsis thaliana] |
RefSeq | XP_002269734.1 | 0 | 3 | 532 | 344 | 873 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312784.1 | 0 | 5 | 532 | 18 | 543 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520142.1 | 0 | 5 | 532 | 40 | 566 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eib_A | 0.000000000000004 | 80 | 533 | 221 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 2wq8_A | 0.000000000000005 | 80 | 533 | 243 | 660 | A Chain A, Glycan Labelling Using Engineered Variants Of Galactose Oxidase Obtained By Directed Evolution |
PDB | 2eid_A | 0.000000000000006 | 80 | 533 | 221 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
PDB | 1k3i_A | 0.000000000000007 | 80 | 533 | 238 | 655 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2eic_A | 0.000000000000007 | 80 | 533 | 221 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY294515 | 322 | 9 | 330 | 0 |
FC880639 | 283 | 9 | 291 | 0 |
CK283124 | 322 | 29 | 348 | 0 |
GT702712 | 268 | 62 | 329 | 0 |
CX187570 | 251 | 169 | 417 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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