Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10031220m |
Family | GH28 |
Protein Properties | Length: 528 Molecular Weight: 57379.4 Isoelectric Point: 8.7305 |
Chromosome | Chromosome/Scaffold: 4 Start: 22577317 End: 22582276 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 134 | 483 | 0 |
AAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLI IPLHNNTLPDKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG DDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKENTKACVSNITVRDVMMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKSTCKN QTSAVALSGITYERVKGTYTVKPVHFACSDSLPCVDVTLSVIELKPVQER |
Full Sequence |
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Protein Sequence Length: 528 Download |
MRGLSFRSLA FLFLIAFLVW SASFETCNAR RGRHWRHGRS SNSVSLSKKN NKGNIHRKGG 60 HHNYHNGKPK PKPKPKPKAP SHNKSPPLAP AVPTKPVYDV PPPSHHSSVF NVKDFGAKGN 120 GVSDDTKAFE AAWAAACKVE ASIMVVPAES VFLVGPMSFS GPYCQANIIF QLDGTIIAPT 180 GSKDWGKGLL WWLDFTKLKG ITIQGKGIID GRGSVWWQDY PYDDPIDDES KLIIPLHNNT 240 LPDKPPTPIR SELSGKMPSI KPTALRFYGS FNVTVTGITI QNSPQCHLKF DNCIGVVVHD 300 VSVSSPGDSP NTDGIHLQNS KDVLIHTSNL ACGDDCVSIQ TGCSNVYVHN VNCGPGHGIS 360 IGSLGKENTK ACVSNITVRD VMMHNTMNGV RIKTWQGGSG SVQGVLFSNI QVSEVQLPIV 420 IDQFYCDKST CKNQTSAVAL SGITYERVKG TYTVKPVHFA CSDSLPCVDV TLSVIELKPV 480 QERYHMYDPY CWQAFGESTT PTHPPIACLQ TGKPPSNRPQ SSPDACF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-67 | 110 | 477 | 373 | + polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-71 | 105 | 478 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-79 | 108 | 478 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-81 | 142 | 477 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-95 | 109 | 509 | 406 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 526 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_563875.6 | 0 | 2 | 526 | 5 | 532 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 526 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 526 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 526 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-24 | 148 | 428 | 48 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 5e-20 | 88 | 425 | 6 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5e-20 | 88 | 425 | 6 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5e-20 | 88 | 425 | 6 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5e-20 | 88 | 425 | 6 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |