y
Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10031337m |
Family | PL1 |
Protein Properties | Length: 492 Molecular Weight: 53078.7 Isoelectric Point: 6.3157 |
Chromosome | Chromosome/Scaffold: 4 Start: 7060367 End: 7066219 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 128 | 335 | 0 |
AVIQTEPIWITFASNMLIKLKHELIINSYKTIDGRGANVEITGNGCLTLQYVSHVIIHNVHIHHCKPSGNTMIASSPTHVGYRGKSDGDGISIFGSQKIW VDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHNEVMLLGHNDKYALDMGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTSWEMYAIGGSANPTIN SQGNRYTA |
Full Sequence |
---|
Protein Sequence Length: 492 Download |
MLLNTCILLE CLFFLIFSSS ATISSLNLTL PHQHPDPDAV AQDVQRRVNV SLSRRQALAI 60 NAQCQTGNPI DDCWHCDPNW AANRQRLADC SVGFAQGTLG GKGGQIYVVT DSSDSDPANP 120 TPGTLRHAVI QTEPIWITFA SNMLIKLKHE LIINSYKTID GRGANVEITG NGCLTLQYVS 180 HVIIHNVHIH HCKPSGNTMI ASSPTHVGYR GKSDGDGISI FGSQKIWVDH CSLSYCTDGL 240 IDAIMGSTGI TISNNYFSHH NEVMLLGHND KYALDMGMQV TIAFNHFGVA LVQRMPRCRR 300 GYIHVVNNDF TSWEMYAIGG SANPTINSQG NRYTAPPDDN AKEVTKRVET DESEWAGWNW 360 RTEGDVMVNG AFFVPSGVGL STQYAKASSV EPKSAALIDR LTMNAGVFGG PRDDEGEGNS 420 YPGFSGGGSG SGGTNRNNGD GDFFGMVFGS GASRLPPPSP STSIFLSLLI ILILYTITNH 480 DAPLSLQLLL L* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 97 | 331 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-56 | 148 | 333 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-65 | 142 | 337 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 27 | 474 | 24 | 492 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_196051.2 | 0 | 6 | 480 | 18 | 515 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 458 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 7 | 412 | 8 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 4 | 457 | 6 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 68 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 68 | 407 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-18 | 87 | 333 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000003 | 93 | 406 | 22 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000003 | 93 | 406 | 22 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |