Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10031429m |
Family | PL1 |
Protein Properties | Length: 470 Molecular Weight: 51883.7 Isoelectric Point: 6.5006 |
Chromosome | Chromosome/Scaffold: 4 Start: 21857650 End: 21859855 |
Description | Pectate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 189 | 389 | 0 |
WIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYALGGSASPTINSQGNRFVA P |
Full Sequence |
---|
Protein Sequence Length: 470 Download |
MVDNCVVYTW LIFLSEKDEE LLLAAETSTM GPLRSRNQLS HTCIHPLHSP LYFIFFPSRE 60 KVREIEQMAI PLLLWLLLCL LAPTFISSSP VQDPELVVEE VHKSINASRR SLGFLSCGTG 120 NPIDDCWRCD PKWEENRQQL ADCAIGFGKQ AIGGKDGKIY VVTDSGDDDP VNPKPGTLRY 180 AVIQDEPLWI IFARDMVITL KEELIMNSFK TIDGRGASVH IAGGPCITIQ YVTNIIIHGI 240 NIHDCKRGGN ANVRDSPSHY GWRTISDGDG VSIFGGSHVW VDHCSLSNCN DGLIDAIHGS 300 TAITISNNYM THHNKVMLLG HSDTFTQDKN MQVTIAFNHF GEGLVQRMPR CRHGYFHVVN 360 NDYTHWEMYA LGGSASPTIN SQGNRFVAPN DRFNKEVTKY EDAPESEWKN WNWRSEGDLM 420 VNGAFFTPSG AGASSSYAKA SSLGARPSSL ISSITAGAGS LNCRKGKPC* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
pfam13229 | Beta_helix | 0.006 | 223 | 308 | 96 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
COG3866 | PelB | 4.0e-26 | 208 | 386 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 9.0e-75 | 201 | 386 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 3.0e-82 | 195 | 390 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 87 | 469 | 27 | 409 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 83 | 469 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 83 | 469 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 83 | 469 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 87 | 469 | 21 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 121 | 430 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 121 | 430 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-16 | 140 | 388 | 2 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.000000000000003 | 255 | 460 | 128 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.000000000000003 | 255 | 460 | 128 | 358 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FG606120 | 338 | 90 | 427 | 0 |
DY291334 | 378 | 53 | 428 | 0 |
DY265124 | 348 | 51 | 396 | 0 |
DY300301 | 317 | 51 | 367 | 0 |
DY264780 | 374 | 56 | 428 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|