| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10031440m |
| Family | CBM43 |
| Protein Properties | Length: 467 Molecular Weight: 51444.4 Isoelectric Point: 9.7539 |
| Chromosome | Chromosome/Scaffold: 4 Start: 16652628 End: 16655000 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 377 | 460 | 5.5e-28 |
| WCVAAKVANTTALSSALSYACSQGNKTCDPIQPGKPCAKPGSLVWKASYAFSSYWSQFRKLGGTCYFNGLATQTIKDPSHGSCK | |||
| GH17 | 27 | 350 | 0 |
| VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNTDIQVSIMVPNEIINNISLSSQSLSDQWVRTNVLPYLPGTKIRYLLVGNEILSL PDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWSSDPKNIHLDYALLEST NITYTDPVTKLTYTNLFDQMLDAVVFAMKKLGYPDIRIFIAETGWPNGGDYDQIGANIYNAATYNRNIVKKLTAKPAIGTPARPGWVLPSFIFALYNENQ KPGPGTERHFGLLYPNGSHVYEID | |||
| Full Sequence |
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| Protein Sequence Length: 467 Download |
| MGLVVAHLLL ASVMFFSIGS AEMSSKVGVC YGQLGNNLPS PQESVELMIK SLKATRVKIY 60 DANPKILKAL KNTDIQVSIM VPNEIINNIS LSSQSLSDQW VRTNVLPYLP GTKIRYLLVG 120 NEILSLPDKS IWPNLVPAMR KIRKSLKTLG ARKIKVGTPS AMDVLQSSFP PSNGTFRSDI 180 SESVMRPMLH FLNRTKSFFF VDAYTFFPWS SDPKNIHLDY ALLESTNITY TDPVTKLTYT 240 NLFDQMLDAV VFAMKKLGYP DIRIFIAETG WPNGGDYDQI GANIYNAATY NRNIVKKLTA 300 KPAIGTPARP GWVLPSFIFA LYNENQKPGP GTERHFGLLY PNGSHVYEID LSGNAPEKEY 360 GPLPKPTNNE PYKGKIWCVA AKVANTTALS SALSYACSQG NKTCDPIQPG KPCAKPGSLV 420 WKASYAFSSY WSQFRKLGGT CYFNGLATQT IKDPSHGSCK FPSVTL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 1.0e-19 | 377 | 448 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-34 | 377 | 461 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-109 | 27 | 350 | 325 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65039.1 | 0 | 16 | 466 | 14 | 460 | putative glucan endo-1-3-beta-glucosidase [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 6 | 466 | 9 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_683538.1 | 0 | 16 | 466 | 14 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002303070.1 | 0 | 4 | 466 | 1 | 461 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002334812.1 | 0 | 9 | 466 | 9 | 465 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 27 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 26 | 352 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 26 | 352 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_B | 0 | 26 | 352 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_A | 0 | 26 | 352 | 1 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
