Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10031653m |
Family | PL1 |
Protein Properties | Length: 420 Molecular Weight: 46157.3 Isoelectric Point: 6.9692 |
Chromosome | Chromosome/Scaffold: 4 Start: 18116848 End: 18118720 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 132 | 337 | 0 |
IQKEPLWIIFAKDMNIKLQQELIVQGSKTIDGRGAKVHIANGAGIMLQFVKNVIIHGIHIHNISPCSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLD HLTLSQAHDGLIDAIQASTAITISNCHLSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLQGPTILSQ GNRFFA |
Full Sequence |
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Protein Sequence Length: 420 Download |
MPCLSAHIAE VDEVWRRRAE EAMQTTEQYY DPNPVAVANH LNMKVQDLSK QAIAKRGLLN 60 AESGQCEATN PIDKCWRCKE NWAEDRQALA GCALGFGSKA TGGKGGKIYE VTDPSDNDME 120 NPKVGTLRHA VIQKEPLWII FAKDMNIKLQ QELIVQGSKT IDGRGAKVHI ANGAGIMLQF 180 VKNVIIHGIH IHNISPCSGG MIRDSVDHVG KRGQSDGDAV SIFGSSNIWL DHLTLSQAHD 240 GLIDAIQAST AITISNCHLS NHDKAILLGA SDTFTEDKKM QVTVAFNRFD KGLVQRMPCV 300 RFGFAHVVNN DYNQWEMYAI GGLQGPTILS QGNRFFASNN QNAKEVTKRM NCSPEEGKSW 360 IWRSEGDVLL NGAYFNSSGD PKKQIQYQMD NVIKPESGTE VERITKFAGA LVCKPGQEC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-11 | 7 | 47 | 41 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-29 | 159 | 410 | 279 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-63 | 150 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-68 | 144 | 339 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 2 | 419 | 22 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 2 | 419 | 51 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 2 | 419 | 22 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 1 | 419 | 9 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 4 | 419 | 22 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 412 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 412 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 150 | 335 | 61 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 9e-19 | 163 | 312 | 140 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 1e-17 | 84 | 339 | 3 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY275180 | 366 | 1 | 358 | 0 |
FC878174 | 266 | 1 | 266 | 0 |
CV885629 | 254 | 1 | 254 | 0 |
CV885630 | 213 | 208 | 420 | 0 |
HO778688 | 403 | 18 | 420 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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